Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0111.Seq
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    25   9.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   9.1  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 186 NTSQFLRTLSQVESKLSEQINYLLKFQ 266
           N SQF   LS + S+L  Q N L KF+
Sbjct: 352 NDSQFAAGLSLLASELESQKNLLKKFE 378


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 213 SQVESKLSEQINYLLKFQLDN 275
           +++  K+++ +NY+LKF  DN
Sbjct: 264 NELFKKMTDDLNYVLKFPFDN 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,009
Number of Sequences: 5004
Number of extensions: 62704
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)