Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0111.Seq
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0029 - 25194827-25195095,25195129-25197970                       34   0.11 
01_07_0316 - 42696640-42697361,42697505-42697733                       32   0.44 
01_06_0035 + 25782410-25783384,25784130-25784696                       29   5.4  
01_07_0317 + 42699035-42699305,42699411-42700132                       28   9.5  
01_07_0315 - 42692539-42693260,42693357-42693609                       28   9.5  

>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 254 AQVSTGQPHEGSGYASQKVLQMAWHRLE-HVRSWVNELDRLKASHLATPRTATGSVPNGN 430
           + +S   P   + +A  KVL ++W++L  ++ +W+  L+ L    L+   T +G +PN  
Sbjct: 452 SHLSGSVPSWVANFAQLKVLDLSWNKLSGNIPAWIGNLEHLFYLDLSN-NTLSGGIPNSL 510

Query: 431 MTSSGTST 454
            +  G  T
Sbjct: 511 TSMKGLLT 518


>01_07_0316 - 42696640-42697361,42697505-42697733
          Length = 316

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 339 CSKRCQAICKTFCEAYPEPSCGCP 268
           C KRC   C   C+ YP  SCG P
Sbjct: 66  CDKRCPNQCMHLCDFYPGVSCGDP 89


>01_06_0035 + 25782410-25783384,25784130-25784696
          Length = 513

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 209 TQSSGIKVE*TNKLLAQVSTGQPHEGSGYASQKV 310
           T  +G  +E   KLL     G   +G GY SQK+
Sbjct: 424 TDDAGAAIEMVAKLLRDRKAGTEEDGGGYVSQKL 457


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
 Frame = -2

Query: 339 CSKRC--QAI-----CKTFC--EAYPEPSCGCP 268
           C KRC  Q I     CKTFC  + YP  SCG P
Sbjct: 71  CDKRCPNQCIVMCPSCKTFCMCDFYPGVSCGDP 103


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
 Frame = -2

Query: 339 CSKRC--QAI-----CKTFC--EAYPEPSCGCP 268
           C KRC  Q I     CKTFC  + YP  SCG P
Sbjct: 65  CDKRCPNQCIVMCPGCKTFCMCDFYPGVSCGDP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,827,352
Number of Sequences: 37544
Number of extensions: 355724
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)