Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0111.Seq
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       30   1.8  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        30   1.8  
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.3  
SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)               28   9.6  
SB_42713| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 348 DLTCSKRCQAICKTFCEAYPEPSCGCPVET*ASNLFVHSTLIP--LD*VFLKTVMCLIQL 175
           ++ C +R +  C+     Y + +CG P ET      VH    P  L  + L+ +  +I  
Sbjct: 357 EVLCRRRPRCRCRCLKPHYHQFTCGGPTETSTVKRQVHKAAGPDGLSPMVLRELASVIAP 416

Query: 174 VFDQIFLYSI 145
           V  +IF+ S+
Sbjct: 417 VLQKIFIKSL 426


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 18  EISKNN*ITIEIMAAPMERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQ 197
           E+S+ N    E+  A      + DE+EK++             L K      +AE N  +
Sbjct: 649 ELSEANGKNRELEEACENLAGIRDELEKELAGSKLKIQSLENSLDKANEKTSEAEHNNGR 708

Query: 198 FLRTLSQVESKL 233
             +T+S++E+ L
Sbjct: 709 LRKTISELENNL 720


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 324 QAICKTFCEAYPEPSCGCPVET*ASNLFVHSTLIPLD 214
           +  CK++C++  +P CG   ET +S    HS  + +D
Sbjct: 216 KGFCKSYCKSPTKPVCGVNGETYSSICGAHSARVVVD 252


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = +3

Query: 48  EIMAAPMERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVES 227
           EI    +   + LD+++KD+ +            SK+  G  Q ++   +    L ++ +
Sbjct: 46  EIEQLKIRHAEELDQLKKDMASVIQASVGNCSTPSKDADGTAQLKARVRELEEELDELNA 105

Query: 228 KLSEQINYLLKFQLDNHMKVLDML 299
           K  ++    L+ Q D   K LD +
Sbjct: 106 KYDKE----LRIQRDAQQKELDQI 125


>SB_50449| Best HMM Match : Drf_DAD (HMM E-Value=0.00043)
          Length = 801

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 686 TIIT*IVECSHDKKNSLYVSTTQPLVMDNLLSAIYKQSY 570
           +I+  +++ ++     ++VS+   L+MDNLL A Y+ SY
Sbjct: 743 SIMDNLLQAAYQSSYQVFVSS---LIMDNLLQAAYQSSY 778


>SB_42713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +3

Query: 84  LDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQINYLLKF 263
           L ++EK+             +L ++ S Q++ ES  S +LR L +    L ++   L   
Sbjct: 108 LRQLEKEKAKGEEMLKTDILQLKQQLSSQEK-ESQNSDYLRQLQEENQSLKDECEKLRVQ 166

Query: 264 QLDNHMKVLDML 299
            +D  M+  D+L
Sbjct: 167 NIDLKMRTDDLL 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,453,122
Number of Sequences: 59808
Number of extensions: 449746
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)