Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0111.Seq
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    31   0.91 
AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine re...    31   0.91 
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    29   3.7  
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine rece...    29   4.8  
Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 383 EKLSDDPIRSPMI*HVLNDAKPFAKPSVKHIQNLHVVVQLKLEQ 252
           E  SD P RSP+   V N  KP   PS K  +N   + Q+K ++
Sbjct: 193 EASSDAPARSPLKKKVANSVKPVVLPSRKSTRNKKDMNQIKEDE 236


>AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine
           receptor, class v protein22 protein.
          Length = 314

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 598 SCQQYINNHIFR*NLFLIKLVFNNYYYYCFT-QCAGYYLMSIR 473
           S Q  + N +F+   F I  V+ N +Y+CF  +C G  LM+I+
Sbjct: 84  SSQIIMPNFLFKYQHFRIAAVYYNGFYWCFVIRCNGIALMTIQ 126


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 535 FNNYYYYCFTQCAGYYLMSIRLINLISGTGAR*CH 431
           +NN YY+ + +C G   +S++   +I+   +R  H
Sbjct: 94  YNNIYYFLYIRCTGIIFLSLQRYLIITAPTSRITH 128


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 342 TCSKRCQAICKTFCEAYPEPSCGC 271
           TC K CQ +C   C      SCGC
Sbjct: 109 TCCKCCQPVCTNACTNGGGCSCGC 132


>U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine
           receptor, class v protein28 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 535 FNNYYYYCFTQCAGYYLMSIRLINLISGTGAR 440
           +N+ YY+ + +CAG   +SI    +IS   +R
Sbjct: 91  YNSIYYFLYIRCAGIVFLSIHRYLVISAPTSR 122


>Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical
           protein C15C8.3 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 366 SNSFTHDLTCSKRCQAICKTFCEAYPEPSC 277
           SN +  D+TC+    A C ++C++ P  +C
Sbjct: 94  SNLWVPDITCAGGKDATCGSYCKSTPYDAC 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,246
Number of Sequences: 27780
Number of extensions: 354786
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)