Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0111.Seq
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   7.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   7.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 575 IVYILLTGGYPLPMVEWC 628
           +V   LTG YP  + +WC
Sbjct: 471 VVAAALTGTYPTLLPQWC 488


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 416 VPNGNMTSSGT 448
           VP GNMT+ GT
Sbjct: 194 VPEGNMTACGT 204


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 416 VPNGNMTSSGT 448
           VP GNMT+ GT
Sbjct: 70  VPEGNMTACGT 80


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 62 CSHDFYCYLIILRYFQ 15
          C  +F CY  + R+FQ
Sbjct: 11 CRRNFSCYYSLKRHFQ 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,270
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)