Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0109.Seq
         (926 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    26   1.9  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   7.5  
AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8...    23   9.9  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 772 QGNCHYSISLYEQAFFRTPAHRRIXPQTCQYHADAVHRQRGAQMQLR 632
           +GN    ++L +Q+  R PAHR+        H    H+Q G Q Q R
Sbjct: 250 RGNKQNGVNLPQQSAQRQPAHRQ--------HQQWPHQQNGQQQQQR 288


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
 Frame = -2

Query: 439 RLLPSLDVVAVSQAPSPESNPD--SPLPVTTMVVAETTIES**GRHLKDASPVLDHAICK 266
           RL   +++  +S  P P ++P   SP  +   + A    +S     + + S  L H  CK
Sbjct: 354 RLRWMMEMPGMSVPPQPHTHPSYGSPAEIPKHISALGAKQS--KMEVMELSD-LHHPNCK 410

Query: 265 SYPDHQN*RLRTRGPPSIGFDLIKALIPSLVRVLIACISSRITTVIQVTE*DLRNQN*YI 86
                 N +L + G   IG D  +    S   +L++  +S+ T  ++     LRN++ YI
Sbjct: 411 -----MNRKLNS-GDLGIGADSCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYI 464

Query: 85  E 83
           +
Sbjct: 465 Q 465


>AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8
           protein.
          Length = 700

 Score = 23.4 bits (48), Expect = 9.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 486 RYFSSLPPVPGVGNLRACCLPWMW*PFLRLPLRNRTLIPRYP 361
           RY   L  +  + NLR       +   LR    NRT  PRYP
Sbjct: 263 RYAQGLGRIEPLANLREPVREAYYPKLLRTS-NNRTFCPRYP 303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 905,934
Number of Sequences: 2352
Number of extensions: 18598
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100882044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)