Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0108.Seq
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    24   1.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   6.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.4  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 448 FFFPKLCIFILYICVYMMYLIKERR 522
           FFF   C FI  I V ++++ ++RR
Sbjct: 76  FFFAICCDFIALIVVNIVHVFRKRR 100


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 439 KRVFFFPKLCIFILYICVY 495
           KRV FF   C  + +I +Y
Sbjct: 7   KRVLFFFSFCCILFFIYLY 25



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 559 KPNENRREYFYXNIVCTWFF 618
           KP E +R  F+ +  C  FF
Sbjct: 2   KPGELKRVLFFFSFCCILFF 21


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +2

Query: 350 SGLKPCRF--GIVYKGHCFTLI 409
           SG  P +   GI + GH FTL+
Sbjct: 243 SGADPQKLAIGIAFYGHAFTLV 264


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +1

Query: 466 CIFILYICVYMMY 504
           C+ I+ +C+Y  Y
Sbjct: 230 CVLIILLCIYYFY 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,247
Number of Sequences: 336
Number of extensions: 2932
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)