Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0108.Seq
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55578| Best HMM Match : 7tm_1 (HMM E-Value=0)                       31   0.80 
SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_55578| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 333

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = +1

Query: 265 RLMSASLRFEYTQTVLIALNRCKLIVK*IWLKALSIWNRL*GSLFYTYTRRMFLCNSNKR 444
           R+++ ++ F Y    ++   R   ++  +W  A+S+     G+    +  R FL   +  
Sbjct: 123 RMLAIAVPFRYPH--ILTPKRAVALIICVWGYAMSVG----GARVTDWPGRSFLYFVSVV 176

Query: 445 VFFFPKLCIFILYICVYMMYLIKERR 522
            FFFP   + I+YI ++++  I+ +R
Sbjct: 177 CFFFPLTIVIIMYIVIFVVVRIQVKR 202


>SB_21209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 421 FLCNSNKRVFFFPKLCIFILY 483
           F+C  +KRVF    +C+ ILY
Sbjct: 370 FICKYSKRVFIIDGVCLVILY 390


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,303
Number of Sequences: 59808
Number of extensions: 308807
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)