Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0108.Seq
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.2  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.6  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   7.4  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.8  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.8  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 247 SASNITRFGNSTIFQ 203
           + +NIT F NS IFQ
Sbjct: 159 NGNNITNFKNSNIFQ 173


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 149 KICNQCSCINIFTN*YFKSTYYNLI 75
           KI +  S   I  N Y K  YYN+I
Sbjct: 313 KIISSLSNNTIHNNNYNKKLYYNII 337


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 683 SSVDNKLNQLLRYIIXPAINEKKNQVQTILX*KYSR 576
           + +D  L   +R II   ++  KN+ + +   K+SR
Sbjct: 84  TDMDMDLKDSIRKIIRQCVDNAKNEDKCLTAQKFSR 119


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 328 IYLVQSKPFVYIRSEA 281
           +  ++ KPFVY+R  A
Sbjct: 416 VLTIEEKPFVYVREIA 431


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 607 CKLYXNKNTRVGSH 566
           C  Y N NT+VGS+
Sbjct: 375 CGKYPNGNTKVGSY 388


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 273 HQPLEY*GTPLQTLHVLVIRQSFKHQQSLVL 181
           H+P     TP  T  +L + + F+ +Q L +
Sbjct: 6   HKPNRKPRTPFTTQQLLSLEKKFREKQYLTI 36


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 409 TRRM-FLCNSNKRVFFFPKLCIFILYICVYM 498
           TRR  ++  S+   FF P L + ++Y+ +Y+
Sbjct: 191 TRRQGYVIYSSLGSFFIPLLLMSLVYLEIYL 221


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 409 TRRM-FLCNSNKRVFFFPKLCIFILYICVYM 498
           TRR  ++  S+   FF P L + ++Y+ +Y+
Sbjct: 191 TRRQGYVIYSSLGSFFIPLLLMSLVYLEIYL 221


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 409 TRRM-FLCNSNKRVFFFPKLCIFILYICVYM 498
           TRR  ++  S+   FF P L + ++Y+ +Y+
Sbjct: 191 TRRQGYVIYSSLGSFFIPLLLMSLVYLEIYL 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,145
Number of Sequences: 438
Number of extensions: 3574
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)