Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049893E Cluster: Rap/Ran GTPase activating protei...    33   3.2  
UniRef50_UPI00004982BF Cluster: hypothetical protein 1.t00078; n...    31   7.4  

>UniRef50_UPI000049893E Cluster: Rap/Ran GTPase activating protein;
           n=2; Entamoeba histolytica HM-1:IMSS|Rep: Rap/Ran GTPase
           activating protein - Entamoeba histolytica HM-1:IMSS
          Length = 655

 Score = 32.7 bits (71), Expect = 3.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 276 P*LSYSQT*TRDCFAGFVTTVQMFDVQLQLCRFPNFYTVNLQKKK 410
           P  S+ QT  +      + T++  D  L +CR+ N   VN+QK K
Sbjct: 120 PSTSFVQTQKKMLLGNVILTIEEMDTPLYVCRYQNRLDVNIQKTK 164


>UniRef50_UPI00004982BF Cluster: hypothetical protein 1.t00078; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 1.t00078 - Entamoeba histolytica HM-1:IMSS
          Length = 269

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +2

Query: 53  PFRDISFTSRLVRLHYEISCMTLISPKNRAGHETKLHA*N*CMHYESIKLHVKLLV 220
           PF    FTS       EIS M L +PK R   E  L   N  + Y S  +H++LL+
Sbjct: 8   PFIFFIFTSSFA---IEISFMLLAAPKKRPEFERSLRDLNEVLKYNSDNVHLRLLM 60


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 361,095,174
Number of Sequences: 1657284
Number of extensions: 5957263
Number of successful extensions: 9483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9483
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)