Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.92 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   2.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   2.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   2.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   2.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   2.8  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   3.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 316 SLGSLQRYKCLMCNC 360
           S+ SL  YKC+ C C
Sbjct: 864 SIVSLGEYKCVTCKC 878


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 350 IKHLYRCNEPSEAITRSGLRVGQ 282
           +K L RC   SE +TR  L +GQ
Sbjct: 677 LKFLSRCRLLSERLTRWTLILGQ 699


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 182 HYESIKLHVKLLVKLMSRN*FHATRIWKC 268
           +YE+I  H         +N  H TRI+ C
Sbjct: 538 YYETISNHTDASSAKAVKNSDHITRIYAC 566


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 182 HYESIKLHVKLLVKLMSRN*FHATRIWKC 268
           +YE+I  H         +N  H TRI+ C
Sbjct: 538 YYETISNHTDASSAKAVKNSDHITRIYAC 566


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 182 HYESIKLHVKLLVKLMSRN*FHATRIWKC 268
           +YE+I  H         +N  H TRI+ C
Sbjct: 538 YYETISNHTDASSAKAVKNSDHITRIYAC 566


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 182 HYESIKLHVKLLVKLMSRN*FHATRIWKC 268
           +YE+I  H         +N  H TRI+ C
Sbjct: 538 YYETISNHTDASSAKAVKNSDHITRIYAC 566


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 277 GEFTFPNSSGMKLI 236
           GEFT+ N  GMK +
Sbjct: 336 GEFTYENILGMKYL 349


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,446
Number of Sequences: 336
Number of extensions: 1641
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)