Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce...    26   2.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   2.8  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   3.7  
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces...    25   4.8  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    24   8.5  

>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 78  DVKLMSRKGLRCADVCIVSP-DALQAL 1
           D   M+  G+ CAD+C++ P +AL +L
Sbjct: 193 DSNPMTLTGMACADICLLRPEEALSSL 219


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 357 IAHQTFVPL*RTQRSNHAFRFESRTIMANLHF 262
           +A+Q+F+PL         FR  SR  +AN +F
Sbjct: 550 VAYQSFIPLPFLLGPRFKFRSSSRKYLANSYF 581


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 326 EPSEAITRSGLRVGQLWRIYISKF*WHEINFVTLVLPTVSRVI*YFRNACI 174
           EP   IT    RVG  W ++ S+    +I++    +    R+I  FRN+C+
Sbjct: 649 EPQSIITFGKARVGTQWNVFHSEK-ICDISYAN--IQGKDRLIEKFRNSCV 696


>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 165 HEINACITKVLNYT*NCW*N*CHEINFMPLEFGNVNS 275
           HE+N CI ++++          + +NF+PLE GN  S
Sbjct: 213 HELNRCIVQLIDDF--------NMVNFLPLESGNEES 241


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 LEFGNVNSP*LSYSQT*TRDCFAGFVTT 335
           LE    N P +SY +T   +CF+ F ++
Sbjct: 727 LEINTFNCPAISYFETSFDECFSKFASS 754


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,052
Number of Sequences: 5004
Number of extensions: 27366
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)