Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611...    28   3.6  
04_04_0873 - 28905240-28906061                                         27   4.7  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    27   4.7  

>01_05_0252 -
           19959347-19959541,19960307-19960402,19961028-19961132,
           19961220-19961439,19961515-19961584,19961659-19962181,
           19962621-19962672,19963644-19963867,19963955-19964022,
           19965005-19965231,19965747-19965864,19965938-19966058
          Length = 672

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44  QRRPFRDISFTSRLVRLHYEISCMTLISPKNRAGH-ETKLH 163
           QR  F+DI+   +++  H  ++  +L SP N++ +  T++H
Sbjct: 322 QRPSFKDITEELKIIEKHIAVNSCSLASPANKSQNGNTEVH 362


>04_04_0873 - 28905240-28906061
          Length = 273

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +2

Query: 176 CMHYESIKLHVKLLVKLMSRN*--FHATRIWKC-KFAIIVLLSNLNA*LLRWVRYNGTNV 346
           C+ +E +K +    + + S N    H +R WK     +I + SNL   L+R + Y G N 
Sbjct: 132 CVGHERVKCYTDKGITIWSGNDDECHDSR-WKYGATGVISVASNLIPGLMRKLMYEGENT 190

Query: 347 *CAIAIM*VSKFLYCK 394
                ++ + K+L+C+
Sbjct: 191 ALNDKLLPLMKWLFCQ 206


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 228 CHEINFMPLEFGNVN 272
           CHE+  +P+ FGN+N
Sbjct: 636 CHELEALPMSFGNLN 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,616,743
Number of Sequences: 37544
Number of extensions: 161260
Number of successful extensions: 257
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)