Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127215-1|AAI27216.1|   92|Homo sapiens MED26 protein protein.        30   3.7  
BC110430-1|AAI10431.1|  600|Homo sapiens mediator complex subuni...    30   3.7  
AF104253-1|AAD12722.1|  600|Homo sapiens transcriptional co-acti...    30   3.7  

>BC127215-1|AAI27216.1|   92|Homo sapiens MED26 protein protein.
          Length = 92

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +1

Query: 148 RN*IACMKLMHALRKY*ITRETVGKTNVTKLIS 246
           RN +A ++++ +L KY IT+E + +T + KLI+
Sbjct: 26  RNMVAVLEVISSLEKYPITKEALEETRLGKLIN 58


>BC110430-1|AAI10431.1|  600|Homo sapiens mediator complex subunit
           26 protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +1

Query: 148 RN*IACMKLMHALRKY*ITRETVGKTNVTKLIS 246
           RN +A ++++ +L KY IT+E + +T + KLI+
Sbjct: 26  RNMVAVLEVISSLEKYPITKEALEETRLGKLIN 58


>AF104253-1|AAD12722.1|  600|Homo sapiens transcriptional
           co-activator CRSP70 protein.
          Length = 600

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 13/33 (39%), Positives = 24/33 (72%)
 Frame = +1

Query: 148 RN*IACMKLMHALRKY*ITRETVGKTNVTKLIS 246
           RN +A ++++ +L KY IT+E + +T + KLI+
Sbjct: 26  RNMVAVLEVISSLEKYPITKEALEETRLGKLIN 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,082,643
Number of Sequences: 237096
Number of extensions: 854982
Number of successful extensions: 1174
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3259265358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)