Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81139-5|CAB03481.2|  359|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 rela...    26   9.7  
AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell fac...    26   9.7  

>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 122  ISPKNRAGHETKLHA*N*CMHYESIKLHVKLLVKLMSRN*---FHATRIWKCKFAIIV 286
            ++ ++R G   KL     C  +E I+  +     L S N    FH   +WKC++++I+
Sbjct: 2185 VTDRSRHGIGFKLKYRLTCNSFEHIRPGIFFEHTLTSPNYDGNFHTPSVWKCQYSLII 2242


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +2

Query: 122  ISPKNRAGHETKLHA*N*CMHYESIKLHVKLLVKLMSRN*---FHATRIWKCKFAIIV 286
            ++ ++R G   KL     C  +E I+  +     L S N    FH   +WKC++++I+
Sbjct: 2185 VTDRSRHGIGFKLKYRLTCNSFEHIRPGIFFEHTLTSPNYDGNFHTPSVWKCQYSLII 2242


>Z81139-5|CAB03481.2|  359|Caenorhabditis elegans Hypothetical
           protein W05H5.6 protein.
          Length = 359

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 176 CMHYESIKLHVKLLVKLMSRN 238
           C+H  ++ LHV L ++L  RN
Sbjct: 42  CIHLVNVSLHVALKIRLFHRN 62


>U61948-8|AAB03147.2|  782|Caenorhabditis elegans Human hcf1 related
           protein 1 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 302 SGLRVGQLWRIYISKF*WHEINF 234
           +G+R+G LW + ++   W EI F
Sbjct: 235 NGVRLGDLWYLNLNTLHWTEIKF 257


>AF072907-1|AAD12580.1|  782|Caenorhabditis elegans host cell factor
           1 protein.
          Length = 782

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 302 SGLRVGQLWRIYISKF*WHEINF 234
           +G+R+G LW + ++   W EI F
Sbjct: 235 NGVRLGDLWYLNLNTLHWTEIKF 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,743,333
Number of Sequences: 27780
Number of extensions: 157742
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)