Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.5  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   10.0 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   10.0 

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 109 LHDTNFTKKSRRARN*IACMKLMHALR 189
           + + +F K+S    N + C + MH L+
Sbjct: 372 ISNLSFDKQSLLKENTVTCQEAMHMLK 398


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 380 IWKPT*LQLHIKHLYRCNEPSEAITRSGLR 291
           IW PT        +Y  NEPS AIT + ++
Sbjct: 97  IWTPT--------VYVSNEPSSAITGNNVK 118


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 347 KHLYRCNEPSEAITRSGL 294
           K   RC+  + +ITR+GL
Sbjct: 328 KETCRCSPSNPSITRTGL 345


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 69  LMSRKGLRCADVCIVSPDALQA 4
           L  R+G   +D  ++SP+A +A
Sbjct: 426 LADRRGSESSDSVLLSPEASKA 447


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 376 GNLHNCNCTSNICTVVTN 323
           GN  NCNC+ +    + N
Sbjct: 679 GNPFNCNCSMDWLPGINN 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,561
Number of Sequences: 438
Number of extensions: 1806
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)