Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0105.Seq
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16150.1 68417.m02450 calmodulin-binding protein similar to a...    30   0.56 
At3g16940.1 68416.m02165 calmodulin-binding protein similar to a...    27   6.9  
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac...    26   9.1  

>At4g16150.1 68417.m02450 calmodulin-binding protein similar to
           anther ethylene-upregulated calmodulin-binding protein
           ER1 GI:11612392 from [Nicotiana tabacum]
          Length = 906

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 40  RTAQAFSRH*FHVASSASTL*N*LHDTNFTKKSRRARN*IACMKLMHALRKY*ITRETVG 219
           R   AF  H   V SSA           F  K   A+N IA MK+ HA R + + R+   
Sbjct: 712 RIQGAFREHELKVRSSA---------VRFASKEEEAKNIIAAMKIQHAFRNFEVRRKIAA 762

Query: 220 KTNV 231
              +
Sbjct: 763 AARI 766


>At3g16940.1 68416.m02165 calmodulin-binding protein similar to
           anther ethylene-upregulated protein ER1 GI:11612392 from
           [Nicotiana tabacum]; contains Pfam profile: PF00612 IQ
           calmodulin-binding motif (3 copies)
          Length = 852

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 124 FTKKSRRARN*IACMKLMHALRKY 195
           F  K   A++ IA MK+ +A RKY
Sbjct: 679 FANKEEEAKSIIAAMKIQNAFRKY 702


>At5g18560.1 68418.m02194 AP2 domain-containing transcription
           factor, putative AP2/EREBP-like transcription factor
           LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
          Length = 348

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 349 SNICTVVTNPAKQSRVQV*E*DNYGEFTFPNSSGMKLIS*H*FYQQFH 206
           +++ T++TNP   S + V   +N   F  PNSS   +I  H  YQ +H
Sbjct: 115 TDVHTILTNPNLHSLI-VSPYNNNQSF-LPNSSPQFVIDHHPHYQNYH 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,037,539
Number of Sequences: 28952
Number of extensions: 139580
Number of successful extensions: 241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)