Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0104.Seq
(961 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 5.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 5.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 5.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 5.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 5.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 5.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 5.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 5.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 5.2
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 27 5.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 5.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 5.2
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 9.1
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +3
Query: 567 QPSNWNLNRF--IEDRLXTGTQVAHLS 641
QP NW+ F ++DR+ G+ ++HL+
Sbjct: 7 QPENWHEQDFRAVDDRVRGGSSISHLT 33
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 185 IRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVL 280
+RA L R W+ ++YG P K+N+ L
Sbjct: 284 VRAHKLPTRPWSKSVIYGGVYPNKINRKTIKL 315
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 102 CRSISLITLFGYYGYIFFTTDSSICTNLLE 191
CR+ SL+ G GYIF ++ N +E
Sbjct: 500 CRTSSLVEELGQVGYIFSDKTGTLTRNQME 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,577,059
Number of Sequences: 5004
Number of extensions: 70698
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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