Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0104.Seq
         (961 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602...    29   7.3  
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    29   7.3  
06_03_1239 + 28610231-28610323,28610402-28610486,28610581-286108...    28   9.6  

>09_04_0480 +
           17958726-17958926,17959294-17959382,17960176-17960242,
           17960329-17960444,17960978-17961044,17961158-17961206,
           17961630-17961715,17961825-17962078,17962158-17962213,
           17962683-17962768,17963047-17963139,17963790-17964219,
           17964338-17964861,17964962-17965190,17965271-17965566
          Length = 880

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 180 NLLEPPIFP*GLGTSDSYMAIVS 248
           N++ P +FP G GT DS++AI S
Sbjct: 408 NVISPSMFPSGKGTMDSHVAIGS 430


>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 218 NFRLVYGDCLPAKLNQSVTVLIETIRF 298
           +F  V+G CLP KL  +++  +ET+ +
Sbjct: 96  SFSSVFGSCLPCKLTGTISSTMETVGY 122


>06_03_1239 +
           28610231-28610323,28610402-28610486,28610581-28610870,
           28611018-28611137,28611450-28611608
          Length = 248

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = -1

Query: 217 PRPQGKIGGSNKLVQIDESVVK 152
           P   G  GGS  LVQIDESVVK
Sbjct: 163 PYLSGTGGGSLDLVQIDESVVK 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,685,826
Number of Sequences: 37544
Number of extensions: 428533
Number of successful extensions: 779
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)