Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0104.Seq
         (961 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   2.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   7.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   9.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 381 REYYK--IMYAFSKGQIYHQTRKELAYIMRNLIVSMRTVTDWF 259
           +E+Y+  +++ F KG+   Q  K+L  +  +  +  R   +WF
Sbjct: 5   KEHYRHILLFYFRKGKNASQAHKKLCAVYGDEALKERQCQNWF 47


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 102 CRSISLITLFGYYGYIFFTTDSSI 173
           C   S++ + GY  YI+FTT  +I
Sbjct: 535 CGLSSMLCIPGYMIYIWFTTSGTI 558


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 102 CRSISLITLFGYYGYIFFTTDSSI 173
           C   S++ + GY  YI+FTT  +I
Sbjct: 588 CGLSSMLCIPGYMIYIWFTTSGTI 611


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 652 HSRXGTSGPIESHHSHTT 705
           H+   T GP   HH H T
Sbjct: 341 HTMGPTMGPPHHHHHHQT 358


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 176 HQFIRAPYLSLRSWNFRLVYGDCLPAKLNQSVTVLI 283
           H +I +  + + SW    +  + +PA++   VT L+
Sbjct: 219 HTYIPSALIVVMSWIAFWIKPEAIPARVTLGVTSLL 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,494
Number of Sequences: 438
Number of extensions: 5236
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)