Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   2.0  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   4.7  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   4.7  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.2  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.2  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   6.2  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   6.2  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 765 DSPYSADAAGSLSISRSEGLSMVLSIASVTSTSFPSDCSR 646
           DSPY A  A +  +  SEG       ++ +S S P DCS+
Sbjct: 65  DSPYDASVAAACKLYSSEGQQN----SNYSSNSKP-DCSK 99


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 820 IIIICLGTIVSIMV 861
           III+CLG I ++MV
Sbjct: 76  IIIMCLGVIGNVMV 89


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 820 IIIICLGTIVSIMV 861
           III+CLG I ++MV
Sbjct: 76  IIIMCLGVIGNVMV 89


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 577 WLIVSLFYWRFFFCF 533
           WL  S F+ +FF C+
Sbjct: 412 WLSCSSFFQQFFHCY 426


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 741 AGSLSISRSEGLSMVLSIASVTS 673
           AGS    R+ G   V S+A VTS
Sbjct: 923 AGSTGTRRATGCGRVESVAEVTS 945


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 661 FRLFTRAHGAIFIHWSLFFWRTFF*YLFWLIVSLF 557
           FR+ T  + ++ I+  L F   F      LIV+LF
Sbjct: 74  FRIATNENNSLVINKRLIFIECFVMMALTLIVTLF 108


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 661 FRLFTRAHGAIFIHWSLFFWRTFF*YLFWLIVSLF 557
           FR+ T  + ++ I+  L F   F      LIV+LF
Sbjct: 74  FRIATNENNSLVINKRLIFIECFVMMALTLIVTLF 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,494
Number of Sequences: 336
Number of extensions: 2342
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27099446
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)