Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    29   0.97 
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    26   6.9  

>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 1   LVPNSARAGRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEE 138
           L P   RAGR S         K+ G + +  NPR P P   F++ +
Sbjct: 179 LPPAGLRAGRGSQISASLAWLKTGGASAAPSNPRQPPPTSNFSNRK 224


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 127 NDEEYCGDYDQFDLANEVDTLEQFLKL 207
           N E     YD +D  ++VD+LE+ LKL
Sbjct: 455 NQEWLHNFYDAYDALDDVDSLERALKL 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,518
Number of Sequences: 5004
Number of extensions: 40291
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)