Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1454 - 27222004-27222296,27222389-27222500                       31   1.8  
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    28   9.6  

>08_02_1454 - 27222004-27222296,27222389-27222500
          Length = 134

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 64  KSSGGTVSDXNPRSPXPPQMFNDEEYCGDYDQFDLANEV-DTLEQF 198
           K  GG       R   PPQ  ++ + CGD+   DL +EV + L+QF
Sbjct: 13  KKKGGVAKKPISRKKLPPQNCSESQDCGDH---DLGDEVEEQLQQF 55


>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 637 GAIFIHWSLFFWRTFF*YLFWLIVSLFYWRFFFCFISNQI 518
           GAIF+    +    FF + F+     F++ FFF F S  +
Sbjct: 73  GAIFVLVGQWEGYAFFFFFFFFFFFFFFFFFFFFFFSGDV 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,648,311
Number of Sequences: 37544
Number of extensions: 249691
Number of successful extensions: 630
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)