Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061162-1|AAL28710.1|  158|Drosophila melanogaster LD12912p pro...   104   2e-22
AE014296-1247|AAF50570.2|  158|Drosophila melanogaster CG8582-PB...   104   2e-22
AE014296-1246|AAN12061.1|  158|Drosophila melanogaster CG8582-PA...   104   2e-22
AJ272505-1|CAB76915.1|  158|Drosophila melanogaster Sh3bgr prote...   100   3e-21
AF007780-1|AAB87384.1| 1518|Drosophila melanogaster CHD3 protein.      29   7.2  
AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    29   7.2  

>AY061162-1|AAL28710.1|  158|Drosophila melanogaster LD12912p
           protein.
          Length = 158

 Score =  104 bits (249), Expect = 2e-22
 Identities = 43/61 (70%), Positives = 52/61 (85%)
 Frame = +1

Query: 25  GRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCGDYDQFDLANEVDTLEQFLK 204
           G+ES+K+ MQN + S+GGTVSD  PR P PPQ+FND+EYCGDYD FD+ANE+DTLE FLK
Sbjct: 43  GKESEKELMQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVFLK 102

Query: 205 L 207
           L
Sbjct: 103 L 103


>AE014296-1247|AAF50570.2|  158|Drosophila melanogaster CG8582-PB,
           isoform B protein.
          Length = 158

 Score =  104 bits (249), Expect = 2e-22
 Identities = 43/61 (70%), Positives = 52/61 (85%)
 Frame = +1

Query: 25  GRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCGDYDQFDLANEVDTLEQFLK 204
           G+ES+K+ MQN + S+GGTVSD  PR P PPQ+FND+EYCGDYD FD+ANE+DTLE FLK
Sbjct: 43  GKESEKELMQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVFLK 102

Query: 205 L 207
           L
Sbjct: 103 L 103


>AE014296-1246|AAN12061.1|  158|Drosophila melanogaster CG8582-PA,
           isoform A protein.
          Length = 158

 Score =  104 bits (249), Expect = 2e-22
 Identities = 43/61 (70%), Positives = 52/61 (85%)
 Frame = +1

Query: 25  GRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCGDYDQFDLANEVDTLEQFLK 204
           G+ES+K+ MQN + S+GGTVSD  PR P PPQ+FND+EYCGDYD FD+ANE+DTLE FLK
Sbjct: 43  GKESEKELMQNKSTSNGGTVSDPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVFLK 102

Query: 205 L 207
           L
Sbjct: 103 L 103


>AJ272505-1|CAB76915.1|  158|Drosophila melanogaster Sh3bgr protein
           protein.
          Length = 158

 Score =  100 bits (240), Expect = 3e-21
 Identities = 42/61 (68%), Positives = 51/61 (83%)
 Frame = +1

Query: 25  GRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCGDYDQFDLANEVDTLEQFLK 204
           G+ES+K+ MQN + S+GGTVS   PR P PPQ+FND+EYCGDYD FD+ANE+DTLE FLK
Sbjct: 43  GKESEKELMQNKSTSNGGTVSVPEPRHPLPPQLFNDDEYCGDYDAFDMANEIDTLEVFLK 102

Query: 205 L 207
           L
Sbjct: 103 L 103


>AF007780-1|AAB87384.1| 1518|Drosophila melanogaster CHD3 protein.
          Length = 1518

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 10  NSARAGRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYC 144
           NS  + R +D D+     K+ G    D  P++    Q F DEEYC
Sbjct: 2   NSMSSKRGADPDW-----KTPGKASKDKRPKTNAKKQKFRDEEYC 41


>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 762 SPYSADAAGSLSISRSEGLSMVLSIASVTSTSFPSDCSRELTVPFSFTGPSFS 604
           S Y A + GS S S S   S     +S +S  +PS  S     P + +G SFS
Sbjct: 840 SSYGAPSTGSGSSSFSSSSSSFSGASSSSSAGYPSAPSSSYGAPSTGSGHSFS 892


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,746,937
Number of Sequences: 53049
Number of extensions: 420772
Number of successful extensions: 1270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4792133502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)