Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical ...    46   4e-05
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    30   2.1  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    30   2.1  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    30   2.1  
U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like p...    30   2.8  
U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like p...    30   2.8  
AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like ...    30   2.8  
Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL132876-1|CAB60842.2|  132|Caenorhabditis elegans Hypothetical
           protein Y105E8A.1 protein.
          Length = 132

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 22/54 (40%), Positives = 31/54 (57%)
 Frame = +1

Query: 46  FMQNNAKSSGGTVSDXNPRSPXPPQMFNDEEYCGDYDQFDLANEVDTLEQFLKL 207
           FM+ NA   G         +  PPQ F ++EY GDY+ FD + E DT+ +FL+L
Sbjct: 51  FMRENASKKGPN------GAVLPPQFFYEDEYLGDYEDFDTSVEADTITEFLRL 98


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 653 QSEGKDVEVTEAIDKTIDNPSDLL 724
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALSKNVDNPLDLM 180


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 653 QSEGKDVEVTEAIDKTIDNPSDLL 724
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALSKNVDNPLDLM 180


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 653 QSEGKDVEVTEAIDKTIDNPSDLL 724
           +  GKD+++  A+ K +DNP DL+
Sbjct: 155 RDSGKDIQLVGALSKNVDNPLDLM 178


>U41007-15|AAQ01538.1|  564|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform b protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 653 QSEGKDVEVTEAIDKTIDNPSDLL 724
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALPKNVDNPLDLM 180


>U41007-14|AAA82277.1|  690|Caenorhabditis elegans Kinesin-like
           protein protein 10,isoform a protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 653 QSEGKDVEVTEAIDKTIDNPSDLL 724
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALPKNVDNPLDLM 180


>AB023577-1|BAB82459.1|  690|Caenorhabditis elegans Kinesin like
           protein protein.
          Length = 690

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 653 QSEGKDVEVTEAIDKTIDNPSDLL 724
           +  GKD+++  A+ K +DNP DL+
Sbjct: 157 RDSGKDIQLVGALPKNVDNPLDLM 180


>Z93389-5|CAI79177.1|  212|Caenorhabditis elegans Hypothetical
           protein T13F3.8 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/85 (22%), Positives = 38/85 (44%)
 Frame = +3

Query: 363 KVKETSPVKENSPXXXXXXXXXXATPVPVDNEVQEDVAKQGSPEKEASPIYKIWLEMKQK 542
           KV+E S VK  +             P P + + +E V K+    KEA    +   E ++K
Sbjct: 38  KVREMSTVKMTTTTGLTTNNVNIGNPAPEEKKKEEKVEKKPEENKEAEKKDEPKKEEEKK 97

Query: 543 KNLQ*KRLTMSQKRYQKKVLQKKRD 617
           +  + K     +++ ++   ++K+D
Sbjct: 98  EEEKKKEEKKEEEKKEEVKEEEKKD 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,479,771
Number of Sequences: 27780
Number of extensions: 223784
Number of successful extensions: 699
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)