Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0103.Seq
         (960 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   9.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 577 WLIVSLFYWRFFFCF 533
           WL  S F+ +FF C+
Sbjct: 416 WLSCSSFFQQFFHCY 430


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 932 GHIXGLQKIFPNXIQGLIMP 873
           G + G+Q++F   +QG+ +P
Sbjct: 876 GLLQGVQQVFGQGVQGMNVP 895


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +1

Query: 10  NSARAGRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDE 135
           N+ ++ R  + D  + +  S         PRS   P + +DE
Sbjct: 237 NAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +1

Query: 10  NSARAGRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDE 135
           N+ ++ R  + D  + +  S         PRS   P + +DE
Sbjct: 237 NAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 586 YLFWLIVSLFYWRFFFCFIS 527
           Y+  L++  FYWR +   +S
Sbjct: 257 YIPMLVMLFFYWRIYNAAVS 276


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +1

Query: 10  NSARAGRESDKDFMQNNAKSSGGTVSDXNPRSPXPPQMFNDE 135
           N+ ++ R  + D  + +  S         PRS   P + +DE
Sbjct: 237 NAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,354
Number of Sequences: 438
Number of extensions: 2944
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)