Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0099.Seq
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.6  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   2.6  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   3.4  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   6.0  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   7.9  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 15/79 (18%)
 Frame = +2

Query: 65  DKSPPKEIKPPPGAVESTQIDDIEYGD--------PPEVEG---PNFAELLT----PVDQ 199
           D +PP    PPP AVE    D  E  D         PE+     P  A+ L     P   
Sbjct: 186 DYNPPPP-PPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPP 244

Query: 200 AIPSASTSKKQLPIPIKNV 256
            +P  ST+  QLP+P +NV
Sbjct: 245 TLPPQSTNTSQLPMPSRNV 263



 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 71  SPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAE 178
           SPP   +PP  A  +T +   +Y  PP    P   E
Sbjct: 166 SPPPSFQPPSAAAPATSLPS-DYNPPPPPPPPPAVE 200


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 143 DPPEVEGPNFAELLTPVDQA-IPSASTSKKQLPIPIKNVGAS 265
           DP  ++  + A  ++P D + +    TS   +PIPIKN G S
Sbjct: 111 DPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNAGHS 152


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 AELLTPVDQAIPSASTSKKQLPIP 244
           + L TP+   +P  STS   +PIP
Sbjct: 128 SSLSTPITPTVPPTSTSSTSIPIP 151



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 AELLTPVDQAIPSASTSKKQLPIP 244
           + L TP+   +P  STS   +PIP
Sbjct: 185 SSLSTPITPTVPPTSTSSTSIPIP 208



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 AELLTPVDQAIPSASTSKKQLPIP 244
           + L TP+   +P  STS   +PIP
Sbjct: 241 SSLSTPITPTVPPTSTSSTSIPIP 264


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 38  RSRQEERDKDKSPPKEI--KPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPS 211
           ++R  + + + S PK+I  K  P +  ++ I    YGD P    P+      P+    P 
Sbjct: 127 QTRGAQSEVNLSTPKQIYSKHSPPSTSTSSIVSSSYGDAPSYLAPSKPNRSPPLKPEDPF 186

Query: 212 AS--TSKKQLPIPIKNVGAS 265
           AS  +S   +    K+  AS
Sbjct: 187 ASFNSSASAIAAASKSAAAS 206


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = +2

Query: 110 ESTQIDDIEYGDPPE----VEGPNFAELLTPVDQAIPSASTSKKQLPIPIKNVGA 262
           E  Q  DI   D  +    +  PN+A L TP  Q  P   T  +  P+P  +V A
Sbjct: 398 EDEQESDIPQSDANDSTVNLNQPNYANL-TPTPQVSPKRPTYSRSSPLPSASVPA 451


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 155 VEGPNFAELLTPVDQAIPSASTSKKQLPIPIKNV 256
           +E P+F +LL P+  +       KK+ P   KNV
Sbjct: 15  LEPPSFKDLLIPIPNSGTKKKNKKKKKPKAKKNV 48


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 199 LIDRCQ*FCKIRAFHFRGITILNIINLCGLNSSR 98
           L +RC   C I   H R  T++ I + C   SS+
Sbjct: 22  LCERCDEKCPICDSHVRPTTLVRICDECAFGSSQ 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,386
Number of Sequences: 5004
Number of extensions: 42211
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)