Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0099.Seq
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0937 + 22801526-22802461 32 0.38
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 29 2.7
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 29 2.7
03_02_0631 + 9969841-9969868,9969965-9970082,9970186-9970828,997... 29 2.7
01_01_0531 - 3892738-3892757,3893083-3893111,3893330-3893355,389... 29 3.5
11_06_0610 - 25449085-25453284 29 4.7
02_05_0826 - 32044850-32044972,32045061-32045164,32045303-32045492 29 4.7
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 6.2
01_06_1224 - 35508842-35510404 28 8.2
>08_02_0937 + 22801526-22802461
Length = 311
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 50 EERDKDKSPPKEIKPPPGAVESTQIDDIEYGD 145
EE ++ SPP PPPG + + DD E GD
Sbjct: 65 EEEEEVSSPPPPPPPPPGFLSDSSSDDEEGGD 96
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 77 PKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSK-KQLPIP 244
P + PP +EST G P + N + P+D +PSAS++K +P+P
Sbjct: 327 PPSVNPPVSTIESTMSQS--QGISPLM---NNKPVSLPLDSTVPSASSNKPMNIPVP 378
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 146 PPEVEGPNFAELLTPVDQAIPSASTSKKQLPI 241
PP EG N A +TP D+ S S S +Q P+
Sbjct: 825 PPGAEGLNSAPRVTPKDKEFLSLSISSQQSPV 856
>03_02_0631 +
9969841-9969868,9969965-9970082,9970186-9970828,
9971146-9971935,9972002-9972051,9972618-9972704
Length = 571
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 68 KSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIP 244
+ P K PPP +S ++ PP++ PN A+ P A A KK P P
Sbjct: 95 QKPSKVSPPPPPPQKSAKVSPPPAAKPPKLSPPNLAKATKPSRLA---AKPPKKAAPGP 150
>01_01_0531 -
3892738-3892757,3893083-3893111,3893330-3893355,
3893639-3893767,3893884-3894151,3894355-3894694,
3894925-3895045,3895135-3895230,3895604-3895777,
3895902-3896068,3896675-3896840,3896915-3897053,
3897135-3897327,3897442-3897524,3897850-3897881
Length = 660
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -2
Query: 275 NISKKLPHSL*VLGVVFSMSRQMVLLDRQVSVILQN*GLPLQGDHHTQYHQFVW 114
N S + V G +F M ++ L + + I++ +P DH + +QF W
Sbjct: 119 NASNVISRFTRVAGELFGMLITVLFLQQAIKGIIEEFKVPRDADHSSPIYQFQW 172
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +2
Query: 74 PPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIP 244
PP E PPP +S E PPE + P TP + PS + P P
Sbjct: 868 PPPEKSPPPPETKSPPTLTPEISPPPEGKSP---PSHTPESSSPPSKESEPPPTPTP 921
>02_05_0826 - 32044850-32044972,32045061-32045164,32045303-32045492
Length = 138
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 86 IKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSA 214
++PPP I +G P EVE P F + + + I A
Sbjct: 43 VQPPPSIAAGLNPGPIPFGGPSEVEVPAFTQAIEAHQRRITQA 85
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 17 KRFWKLHRSRQEERDKDKSPPKEIKPPPGA--VESTQI-DDIEYGD-----PPEVEGPNF 172
KR + HR R++ D D+SP + PP A VE +I DD D P++ N
Sbjct: 30 KRRRRHHRRRRDVDDDDESPLADADRPPAAEDVEEGEILDDAMDVDAVPDAAPQLSSGNH 89
Query: 173 AELLTPVDQAIPSAS 217
A + + D + AS
Sbjct: 90 AHMNSDADATVLHAS 104
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 92 PPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTS 223
PPP V S DD+E+G P +ELL D+ PS+ST+
Sbjct: 61 PPPAPVVSELPDDLEFGLHPPPPLVRASELLGWEDR--PSSSTA 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,400,840
Number of Sequences: 37544
Number of extensions: 286741
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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