BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0099.Seq (699 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41818| Best HMM Match : Brix (HMM E-Value=0.015) 32 0.39 SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68 SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 30 1.6 SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 29 4.8 SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_38362| Best HMM Match : BRCT (HMM E-Value=0) 29 4.8 SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8 SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16) 28 6.3 SB_55239| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 >SB_41818| Best HMM Match : Brix (HMM E-Value=0.015) Length = 170 Score = 32.3 bits (70), Expect = 0.39 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +2 Query: 11 ERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVE 160 + KR + R R+E+ D++PPK++ P +E+T++ D DP + E Sbjct: 32 KEKRERRKKRKREEQELGDEAPPKQV---PRTIENTRVQDETMVDPLDEE 78 >SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1080 Score = 31.5 bits (68), Expect = 0.68 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -3 Query: 106 SSRRGLDLFRWRFIFISFLLSASMQFPESFSL 11 S++RGLDL RW FI+ L PES SL Sbjct: 921 SNQRGLDLIRWTIQFIAVYLMYKGIQPESLSL 952 >SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) Length = 1507 Score = 30.3 bits (65), Expect = 1.6 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +2 Query: 89 KPPPGAVESTQIDDIEYGDP--PEVEGPNFAELLTPV 193 +PPP EST I +EY P + +GP++AE +P+ Sbjct: 85 RPPPLPTESTGIPVVEYVRPDIQDEDGPDYAEPQSPL 121 >SB_9537| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 381 Score = 29.5 bits (63), Expect = 2.7 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = +2 Query: 80 KEIK---PPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQ--AIPSASTSKKQLPI 241 KE+K PPP + +T + PP + P+ E + P +Q +P A +K++ P+ Sbjct: 171 KEVKAPPPPPRSNSATYLRAHSRNGPPVKDRPSSTEPVIPKEQKLTVPKADIAKERQPV 229 >SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) Length = 1301 Score = 28.7 bits (61), Expect = 4.8 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +2 Query: 47 QEERDKDKS-PPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTS 223 QE KS PP ++ P GA + ++++ G PP + P E P +Q + S Sbjct: 1023 QERPTSFKSWPPPQLAPGGGAQPKSFLEELFNGAPPGGKEPVGPEDDKPAEQRMSFTSLL 1082 Query: 224 KKQLP 238 K+ P Sbjct: 1083 KEMAP 1087 >SB_54325| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 682 Score = 28.7 bits (61), Expect = 4.8 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%) Frame = +2 Query: 65 DKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGP----NFAELLTPVDQ 199 ++SP ++ PP VES D ++ DP + P +F E L P ++ Sbjct: 196 NESPAVKVMPPSDTVESQSDDKMDILDPSNIPDPPKLEDFVEELNPEEK 244 >SB_38362| Best HMM Match : BRCT (HMM E-Value=0) Length = 1572 Score = 28.7 bits (61), Expect = 4.8 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +2 Query: 41 SRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDP 148 SR RD DKS P E +Q+D I Y DP Sbjct: 1175 SRNHMRDSDKSLSGNGHKLPDESEHSQVDTITYDDP 1210 >SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 326 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +2 Query: 14 RKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQI 124 RKR KL ++ E K K+PPKE +P A E++Q+ Sbjct: 185 RKRT-KLQPAKVPEPKKRKAPPKESQPFEEAFETSQV 220 >SB_4713| Best HMM Match : WSC (HMM E-Value=1.8e-16) Length = 343 Score = 28.3 bits (60), Expect = 6.3 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -3 Query: 193 DRCQ*FCKIRAFHFRGITILNIINLCGLNSSRRG 92 D C CK + FHF I + + CG+N R G Sbjct: 229 DECIQRCKAKGFHFAAINNYTLCS-CGINYGRYG 261 >SB_55239| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 74 Score = 27.9 bits (59), Expect = 8.4 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +2 Query: 26 WKLHRSRQEERDKDKSPPKEIKPPPGAVES 115 WK +++ R+++ P EIK P +VES Sbjct: 9 WKRKSKKKQNREENSIAPDEIKKRPESVES 38 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,666,517 Number of Sequences: 59808 Number of extensions: 319497 Number of successful extensions: 974 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 908 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 969 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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