Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0099.Seq
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    33   0.15 
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    33   0.15 
AL590343-2|CAC35866.1|  158|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL032622-7|CAA21502.1|  158|Caenorhabditis elegans Y66A7A.2 prot...    30   1.8  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z99281-39|CAE45094.2|  665|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z99281-37|CAJ44244.1|  740|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical p...    29   3.2  
AY611485-1|AAT37524.1|  740|Caenorhabditis elegans epidermal gro...    29   3.2  
AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal gro...    29   3.2  
AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AC006762-10|AAF60556.1|  301|Caenorhabditis elegans Hypothetical...    27   9.8  

>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +2

Query: 95  PPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIPIKNVGAS 265
           P GAV+  QI D +  D   +E P  AE  T    A P  ++  + L IP  N  AS
Sbjct: 419 PDGAVKFNQISDFKNNDIGNMESPRMAESQTSETFAAPMDTSFTESLHIPELNRVAS 475


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +2

Query: 95  PPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIPIKNVGAS 265
           P GAV+  QI D +  D   +E P  AE  T    A P  ++  + L IP  N  AS
Sbjct: 419 PDGAVKFNQISDFKNNDIGNMESPRMAESQTSETFAAPMDTSFTESLHIPELNRVAS 475


>AL590343-2|CAC35866.1|  158|Caenorhabditis elegans Hypothetical
           protein Y66A7A.2 protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 465 GKKLRSTEKRLVKRRQDHXHSS 530
           G+ +RS EKRL+K R+D  H +
Sbjct: 97  GRSMRSCEKRLIKSRRDELHDA 118


>AL032622-7|CAA21502.1|  158|Caenorhabditis elegans Y66A7A.2
           protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 465 GKKLRSTEKRLVKRRQDHXHSS 530
           G+ +RS EKRL+K R+D  H +
Sbjct: 97  GRSMRSCEKRLIKSRRDELHDA 118


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 29  KLHRSRQEERDKDKSPPKEIKPPP 100
           + H   +E+R  D++PP+E  PPP
Sbjct: 132 RYHSGPREDRFSDRNPPREHSPPP 155


>Z99281-39|CAE45094.2|  665|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24e protein.
          Length = 665

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 267 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 326

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 327 YSHVKVTVDSDTSPRQQ 343


>Z99281-38|CAE45095.2|  845|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24d protein.
          Length = 845

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 447 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 506

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 507 YSHVKVTVDSDTSPRQQ 523


>Z99281-37|CAJ44244.1|  740|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24h protein.
          Length = 740

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 544 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 603

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 604 YSHVKVTVDSDTSPRQQ 620


>Z99281-36|CAB16527.3|  862|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24a protein.
          Length = 862

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 464 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 523

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 524 YSHVKVTVDSDTSPRQQ 540


>Z99281-34|CAJ44243.1|  917|Caenorhabditis elegans Hypothetical
           protein Y57G11C.24g protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 519 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 578

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 579 YSHVKVTVDSDTSPRQQ 595


>AY611485-1|AAT37524.1|  740|Caenorhabditis elegans epidermal growth
           factor receptorpathway substrate 8 splice variant B
           protein.
          Length = 740

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 544 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 603

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 604 YSHVKVTVDSDTSPRQQ 620


>AY611484-1|AAT37523.1|  917|Caenorhabditis elegans epidermal growth
           factor receptorpathway substrate 8 splice variant A
           protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +2

Query: 2   IRHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAEL 181
           +RHE K+     R    E+D       +  PPP AV + Q     Y  P  +  P     
Sbjct: 519 LRHEEKQIEDEKRRMHAEKDLITKETTQPVPPPAAVVTHQPITKRYDPPISISPPPQRNN 578

Query: 182 LTPVDQAIPSASTSKKQ 232
            + V   + S ++ ++Q
Sbjct: 579 YSHVKVTVDSDTSPRQQ 595


>AL132852-3|CAN86966.1|  249|Caenorhabditis elegans Hypothetical
           protein Y95D11A.3 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 77  PKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIPIKNV 256
           P ++ P    +   + D I   DP +++     + +  +DQ++PS S+    LP  +  V
Sbjct: 60  PNDVDPNDVYLFDEETDQIHQLDPNQLKNNEEIDDVEYIDQSVPSTSSMMTSLPSTVAPV 119


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 50  EERD--KDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLT 187
           EERD  K K   +++ P       TQ+   + G PP ++G NF +  T
Sbjct: 89  EERDTGKKKRNREKLHPMERGFSGTQLVGQKLGAPPPLDGVNFDDFET 136


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 50  EERD--KDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLT 187
           EERD  K K   +++ P       TQ+   + G PP ++G NF +  T
Sbjct: 89  EERDTGKKKRNREKLHPMERGFSGTQLVGQKLGAPPPLDGVNFDDFET 136


>Z81070-11|CAB03006.3| 1086|Caenorhabditis elegans Hypothetical
           protein F26E4.10 protein.
          Length = 1086

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 5   RHERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEV 157
           RH+ +   +L R  Q +     +PP  ++  P   EST    + +GD P +
Sbjct: 30  RHKEEMMQQLGRRFQNQPSTSSAPPDTVEKIPLPTESTSA--LPFGDSPRL 78


>Z79601-6|CAB01887.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 11  ERKRFWKLHRSRQEERDKDKS-PPKEIKPPPGAVESTQIDDIEYGDPPEVE 160
           E  R  K H  R+E++DK+K   P + +P     +  + DD + GD  + E
Sbjct: 226 EPSRKQKAHNQREEKKDKNKKYQPVKEEPDLDDDDDDEDDDDDDGDDDDDE 276


>Z79596-9|CAB01859.1|  872|Caenorhabditis elegans Hypothetical
           protein K09A9.6 protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 11  ERKRFWKLHRSRQEERDKDKS-PPKEIKPPPGAVESTQIDDIEYGDPPEVE 160
           E  R  K H  R+E++DK+K   P + +P     +  + DD + GD  + E
Sbjct: 226 EPSRKQKAHNQREEKKDKNKKYQPVKEEPDLDDDDDDEDDDDDDGDDDDDE 276


>AC006762-10|AAF60556.1|  301|Caenorhabditis elegans Hypothetical
           protein Y42G9A.1 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 8   HERKRFWKLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYG---DPPEVEG 163
           HE KR     R R+E  + D S  K+ +P   +  S   DD+  G    PP  +G
Sbjct: 243 HEVKRVLLKARRREESEESDVSFSKKPRPSSRSPASPNRDDLLLGLDRSPPSDDG 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,133,712
Number of Sequences: 27780
Number of extensions: 247570
Number of successful extensions: 1047
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)