Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0099.Seq
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27290.1 68415.m03280 expressed protein 33 0.24
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 30 1.3
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 29 3.0
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 29 3.0
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 29 3.9
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica... 29 3.9
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica... 29 3.9
At3g14860.2 68416.m01879 NHL repeat-containing protein contains ... 28 5.2
At3g14860.1 68416.m01878 NHL repeat-containing protein contains ... 28 5.2
At5g38840.1 68418.m04698 forkhead-associated domain-containing p... 28 6.8
At5g01370.1 68418.m00050 expressed protein 28 6.8
At4g09680.1 68417.m01590 expressed protein 28 6.8
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 9.0
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 27 9.0
At2g08986.1 68415.m01009 hypothetical protein 27 9.0
>At2g27290.1 68415.m03280 expressed protein
Length = 201
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 38 RSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYG 142
R + E+ DK+ SPP PPP A E T+ +E G
Sbjct: 42 REKAEDIDKNISPPSSSPPPPSAEEVTKKYGLEVG 76
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = +2
Query: 47 QEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSK 226
Q + + PP+ + PPP A+ + + PP V P F+ LL+P +P T
Sbjct: 864 QPQSQPPEPPPEMMPPPPQALPPP----LPHSHPPLVPPPPFSPLLSP---RLPPMVTQL 916
Query: 227 KQLPIPIKNVGASW 268
+N+G W
Sbjct: 917 CGSEASKQNIGHQW 930
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 29 KLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAE--LLTPVDQA 202
K + EE K + PPK+ P P ES + + PP+ E P L +PV
Sbjct: 556 KQETPKPEESPKPQ-PPKQETPKP--EESPKPQPPKQEQPPKTEAPKMGSPPLESPVPND 612
Query: 203 IPSASTSKKQLPIP 244
AS KK+ P P
Sbjct: 613 PYDASPIKKRRPQP 626
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Frame = +2
Query: 32 LHRSRQEERDKDKSP---PKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQA 202
L S E D SP P+E P P + + + PEV+ P VD
Sbjct: 45 LSPSSSPEEDSPLSPSSSPEEDSPLPPSSSPEEDSPLAPSSSPEVDSPLAPSSSPEVDSP 104
Query: 203 IPSASTSKKQLPIP 244
P +S+ + P+P
Sbjct: 105 QPPSSSPEADSPLP 118
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 90 SPLLELLSPHKLMILSM-VIPLKWKALILQNY*HLSIKQYHLPRHRKNNSQY 242
SP L P L +LS+ + W+ L+NY + ++H P H + N Y
Sbjct: 81 SPFLSFKDPSFLALLSLQTLEKPWE---LENYLPHEVPEFHSPIHSETNHYY 129
>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 176
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = +2
Query: 71 SPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIP 244
SPP PPP A + PP V P A L +P Q A T+K P P
Sbjct: 81 SPPPAT-PPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSP 137
>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
to gi|10880495|gb|AAG24277
Length = 191
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = +2
Query: 71 SPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSASTSKKQLPIP 244
SPP PPP A + PP V P A L +P Q A T+K P P
Sbjct: 81 SPPPAT-PPPVASPPPPVASPPPATPPPVATPPPAPLASPPAQVPAPAPTTKPDSPSP 137
>At3g14860.2 68416.m01879 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 493
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 29 KLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPN 169
K+H+ R R +DK+ E KP P S + +EY + + + N
Sbjct: 437 KIHKERSRRRHRDKTTETEPKPTP----SDTVKPVEYSNSSKFDHYN 479
>At3g14860.1 68416.m01878 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 492
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 29 KLHRSRQEERDKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPN 169
K+H+ R R +DK+ E KP P S + +EY + + + N
Sbjct: 436 KIHKERSRRRHRDKTTETEPKPTP----SDTVKPVEYSNSSKFDHYN 478
>At5g38840.1 68418.m04698 forkhead-associated domain-containing
protein / FHA domain-containing protein related to
adaptor protein kanadaptin [Homo sapiens]
gi|13562130|gb|AAK29177
Length = 735
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 68 KSPPKEIKPP-PGAVESTQIDDIEYGDPPEVEGPNFAELLT 187
++P +I+PP P + +Q D+ +PP PN +L T
Sbjct: 12 RNPSHDIEPPEPNSTSISQSDETSTMNPPPPRNPNPPDLKT 52
>At5g01370.1 68418.m00050 expressed protein
Length = 427
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 59 DKDKSPPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTPVDQAIPSA 214
++++ P KEIK TQ DD+ PP PN L +D P +
Sbjct: 47 EENEEPKKEIKTET----ETQNDDVSLHPPPPPPPPNVVAKLMGLDHPAPGS 94
>At4g09680.1 68417.m01590 expressed protein
Length = 1075
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 175 CKIRAFHFRGITILNII---NLCGLNSSRRGLDLFRWRFIFISFLLSASMQFPESFSLVP 5
C I F FR I + N +N S L++ W+F+ LLS SF L+P
Sbjct: 97 CDILGFEFRAIGSKICVLSWNFLPMNHSGGFLEIINWKFVDSGSLLSRCSGI-SSFPLIP 155
Query: 4 N 2
+
Sbjct: 156 S 156
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +2
Query: 71 SPPKEIKPPPGAVESTQIDDIEYGD--PPEVEGPN 169
SPP PPP E+TQ D D PPE E N
Sbjct: 122 SPPPPPPPPPPVEETTQFRDEFRSDTKPPEEETRN 156
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = +2
Query: 74 PPKEIKPPPGAVESTQIDDIEYGDPPEVEGPNFAELLTP 190
PP +KPPP T Y PP P ++TP
Sbjct: 115 PPPTVKPPPPPTPYTPPPPTPYTPPPPTVKPPPPPVVTP 153
>At2g08986.1 68415.m01009 hypothetical protein
Length = 1218
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 169 FCRITDTCRSSNTICLDIEKTTPNTYKECGSFLEMFKKMQEVT 297
F ++ + C SS ++ +E T P T+ + G E F+K QE T
Sbjct: 177 FEKLEEACLSSVSL---LEDTKPRTHMDFGLHHESFEKQQEDT 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,412,105
Number of Sequences: 28952
Number of extensions: 232384
Number of successful extensions: 891
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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