Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0098.Seq
         (846 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0401 - 33678814-33679185,33679564-33679676,33679785-336798...    31   0.87 
02_03_0217 + 16512689-16512838,16514353-16515444                       29   6.2  

>03_06_0401 -
           33678814-33679185,33679564-33679676,33679785-33679834,
           33680024-33680103,33680541-33680635,33681079-33681124
          Length = 251

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 703 GDFFIYRCICFWCEVIFTK 647
           GD F Y+CIC W +++ TK
Sbjct: 15  GDSFCYKCICQWVKIVSTK 33


>02_03_0217 + 16512689-16512838,16514353-16515444
          Length = 413

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 308 STTNLIETPNILTKFQILQYFITAKMVDDD 219
           S TN+I+ P  + K ++LQY    K+  DD
Sbjct: 55  SGTNIIKLPKTIIKLKMLQYLRAGKVPKDD 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,747,735
Number of Sequences: 37544
Number of extensions: 301938
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)