Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0098.Seq
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78412-5|CAB01648.1|  484|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U22833-6|AAA64326.1|  162|Caenorhabditis elegans Hypothetical pr...    28   9.6  
L03524-2|AAA28151.1|  488|Caenorhabditis elegans protein-tyrosin...    28   9.6  

>Z78412-5|CAB01648.1|  484|Caenorhabditis elegans Hypothetical
           protein M176.6a protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 541 HTDTRIFSFIYIDILHTVYIVDCRLLLSISYCI 639
           H  ++I + +Y+D +  +YI+ C LL+ IS  +
Sbjct: 32  HISSQISNVLYMDQMFIIYILICILLILISVIV 64


>U22833-6|AAA64326.1|  162|Caenorhabditis elegans Hypothetical
           protein W02B3.7 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 688 YRCICFWCEVIFTKITIYSNLLTAIIYNQQYIQYVKC 578
           + C+ +W   IF  +  Y+ +LT  I  +  ++YV C
Sbjct: 4   FNCLLYWFLSIFIVVVYYNEILTTPII-EPSVEYVLC 39


>L03524-2|AAA28151.1|  488|Caenorhabditis elegans protein-tyrosine
           kinase protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 541 HTDTRIFSFIYIDILHTVYIVDCRLLLSISYCI 639
           H  ++I + +Y+D +  +YI+ C LL+ IS  +
Sbjct: 36  HISSQISNVLYMDQMFIIYILICILLILISVIV 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,207
Number of Sequences: 27780
Number of extensions: 326077
Number of successful extensions: 682
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)