Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0096.Seq
         (835 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    26   0.42 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    26   0.42 
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.1  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 596 LQRRDW-ENPGVTQLNRLAAHPPFRQLA*IAKRPAPIALPNSCALNGR 736
           LQ   W +NP  T+LN L     +++   I  +P   +LPNSCAL  R
Sbjct: 450 LQVIQWMQNP--TELNGLRDFQEWKEKCDIKGQPY-CSLPNSCALTTR 494


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 596 LQRRDW-ENPGVTQLNRLAAHPPFRQLA*IAKRPAPIALPNSCALNGR 736
           LQ   W +NP  T+LN L     +++   I  +P   +LPNSCAL  R
Sbjct: 457 LQVIQWMQNP--TELNGLRDFQEWKEKCDIKGQPY-CSLPNSCALTTR 501


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 672 SWRKGGCAARRLSWVTPGFSQSRRCKTTAS 583
           SW  GG +A +++   P +  S   ++T++
Sbjct: 231 SWLSGGASASKVTLSVPFYGHSWYLQSTSN 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,436
Number of Sequences: 336
Number of extensions: 4367
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22932949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)