Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0096.Seq
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    33   0.038
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    29   1.1  
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    26   5.7  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   7.6  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 33.5 bits (73), Expect = 0.038
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 296 ASEVVNFDESG*LLRSHGQVPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 126
           + E+++F E    L   G   +  L   C+IN  W     LRL +L +   NQ S  E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302

Query: 125 PEKRLP 108
            EKR+P
Sbjct: 303 QEKRVP 308


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 687 FAIYASWRKGGCAARRLSWVTPGFSQ 610
           +AI + WR G  +  R++W  P F Q
Sbjct: 50  WAITSEWRAGDASLMRVAWAHPSFGQ 75


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 58 ARAEFLQPGGSTSSRAA 8
          A+AEF  PGGS   RAA
Sbjct: 42 AKAEFQNPGGSVKDRAA 58


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 99  PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 197
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,013
Number of Sequences: 5004
Number of extensions: 70931
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)