Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0096.Seq
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049     29   6.0  
12_01_0861 + 8153108-8153266,8154633-8155136                           28   8.0  
03_05_0941 + 29008322-29009686,29009929-29010012,29010889-290110...    28   8.0  
02_05_0700 + 31018480-31019832                                         28   8.0  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 573 ITIHWPSFYNVV-TGKTLALPNLIALQH 653
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
          Length = 444

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 72  LPARGLVPNSCSPGDPLVLERPPP 1
           L  R L P SC+PG P  L  P P
Sbjct: 34  LQGRRLTPPSCTPGTPAALPSPGP 57


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 56  SPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 187
           SP    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 102 SPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>03_05_0941 +
           29008322-29009686,29009929-29010012,29010889-29011052,
           29011208-29011233,29011494-29011583,29012135-29012229,
           29012328-29012495
          Length = 663

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/23 (43%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +3

Query: 600 NVVTGKTLALPNLIALQHI-PLF 665
           N +TG+ +ALP++I ++H+ P+F
Sbjct: 171 NPITGEQIALPSVITIEHVNPIF 193


>02_05_0700 + 31018480-31019832
          Length = 450

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 96  GSRRANYPLPARGLVPNSCSPGDPLVLERPP 4
           G      PLP + L P    PG PLV E+PP
Sbjct: 58  GQSLPGQPLPGQPL-PGQSLPGQPLVGEKPP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,565,288
Number of Sequences: 37544
Number of extensions: 563550
Number of successful extensions: 1498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)