Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0096.Seq
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.86 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 58  ARAEFLQPGGSTSSRAA 8
           A+ EFL PGGS   R A
Sbjct: 66  AKCEFLNPGGSVKDRIA 82


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 483 MSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILELIHAIRTLT 349
           M  C P   DT    +Y+F   R Y +   T VI  +   + TLT
Sbjct: 230 MYACCP--NDTYPMIVYEFSISRHYGILHATYVIPAVTMMLLTLT 272


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 39   CRNSARAPVP 68
            CRNS R PVP
Sbjct: 1333 CRNSRRTPVP 1342


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 611 SHDVVKRRPVNCNTTHYRANWVPGP 537
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,443
Number of Sequences: 438
Number of extensions: 5160
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)