Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0095.Seq
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            28   7.7  
SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 538 DVVAXSQAPSPESNPDSP 591
           DVVA SQAPSPESNP+SP
Sbjct: 105 DVVAVSQAPSPESNPNSP 122


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 547 AXSQAPSPESNPDSP 591
           A SQAPSPESNP+SP
Sbjct: 52  AVSQAPSPESNPNSP 66


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 316 CNYELXNRNNFSIRYWSWNYRGCWH 390
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 465 TLTRPRNRNEYTLNILTRNNWRASLXXXXXXXXXXXAYTKIVAVXKL 325
           T  +   R    ++++ R +WRASL           AY K+VAV KL
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKL 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,058,460
Number of Sequences: 59808
Number of extensions: 385957
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)