Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0094.Seq
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.85 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   7.9  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   7.9  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 450 SSRRYRGRVSRLYTEQAPSLPXQQF 376
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 634 VPTPYTVEKEIPYEXKVPVPQPYTVXRKRSPVSLEIXEFKGAPP 765
           VP P  ++     +  +  P P ++    +PV L   E K  PP
Sbjct: 525 VPKPVNLKSVENPQNNISAPTPSSLQSSNAPVGLGEVESKSVPP 568


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 10  GDHNEVHGYFGGIVGRGCXCQGG 78
           G H  +HG  GG  GRG    GG
Sbjct: 114 GHHGPLHGPHGGFGGRGGGRMGG 136


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 10  GDHNEV---HGYFGGIVGRGCXCQGGERHTEAVEEKKQDKRGIYDIGSYG 150
           G HNE+   +G +  +V       GGE+  E VEE+ +D      I S+G
Sbjct: 647 GSHNELLDLNGAYARLV-EAQKLSGGEKDQEMVEEELEDAPREIPITSFG 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,617
Number of Sequences: 5004
Number of extensions: 39818
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)