Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0094.Seq
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         29   3.6  
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501...    29   6.3  
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802...    28   8.4  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +1

Query: 637 PTPYTVEKEIPYEXKVPVPQPYTVXRKRSP 726
           PTPYT     P     P P PYT   K +P
Sbjct: 269 PTPYTPPTYKPQPKPTPTPTPYTPTPKPNP 298


>05_03_0470 +
           14448243-14448482,14448568-14449181,14449508-14450135,
           14450217-14450827,14450911-14451162,14451243-14451353,
           14451441-14451501,14451603-14451695,14451773-14451940
          Length = 925

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 71  KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
           KE +  P++SKR+ K K  S   D+  +      ++  A+TK  +G +   SV +KD
Sbjct: 78  KEGETAPRRSKRQPKKKVPSKDDDVPANTTGTKKIERLAITKKRKGER---SVNRKD 131


>02_02_0223 -
           8021040-8021247,8022275-8022367,8022808-8023059,
           8023143-8023597,8023667-8023983,8024019-8024298,
           8024423-8024728,8024762-8025130,8025216-8025455
          Length = 839

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 71  KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 241
           KE + TP +SKR+ K K  S   D+  +       + +A+TK  +G +   SV +KD
Sbjct: 78  KEGETTPWRSKRQPKKKVPSKDDDVPANTTGTKNSERSAITKKRKGER---SVNRKD 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,791,872
Number of Sequences: 37544
Number of extensions: 319413
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)