Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0094.Seq
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75553-3|CAA99948.1|  407|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical ...    28   9.9  

>Z75553-3|CAA99948.1|  407|Caenorhabditis elegans Hypothetical
           protein ZC443.3 protein.
          Length = 407

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = +2

Query: 41  VASLAVVAFAKEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVS 220
           VA    V   K EK    +S    KT   ++   L+ED++ ++ +     TKA   +K+ 
Sbjct: 304 VAKSVTVKKDKTEKSENLKSDVPEKTNEVTIAASLLEDVMEQLNLDDKKNTKAASQSKIV 363

Query: 221 ASVTKKDTTSE 253
              +  D+  E
Sbjct: 364 DDASDSDSHEE 374


>AC006748-2|AAF60515.2|  215|Caenorhabditis elegans Hypothetical
           protein Y39A3B.3 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 29  TVILVASLAVVAFAKEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEG 208
           TVIL  +   + F+  +     Q K  NKT GAS   DL +   +E + KAT      E 
Sbjct: 123 TVILYDNFKYLIFSNYK--IQFQKKTYNKTPGASQLNDLRKPAKNERSDKATIEVTTEED 180

Query: 209 TKVSASVT 232
           T +   +T
Sbjct: 181 TTIVDIIT 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,242
Number of Sequences: 27780
Number of extensions: 242586
Number of successful extensions: 663
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)