Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0094.Seq
         (863 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    30   2.3  
At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    29   5.3  
At4g37740.1 68417.m05343 expressed protein identical to transcri...    28   7.0  
At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identica...    28   9.2  

>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 62  AFAKEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTK 235
           AF+KE  G  +Q K   K K  S T D + +++SE+  +  +    +EG  V    T+
Sbjct: 109 AFSKE--GLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTR 164


>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 638 PLPTPLRRKSLTX*KFPFPSPTLXEEKGPXFPLKXPSLKVPHPY 769
           P P P R  S      P+P P   +   P +P   P    P PY
Sbjct: 20  PYPAPYRPPSSE----PYPPPPTNQYSAPYYPYPPPPYATPPPY 59


>At4g37740.1 68417.m05343 expressed protein identical to
           transcription activator GRL2 [Arabidopsis thaliana]
           GI:21539882 (unpublished); supporting cDNA
           gi|21539881|gb|AY102635.1|
          Length = 535

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 774 TS*GWGTFKLGYFKGNXGP 718
           +S GWGTF LG+  GN  P
Sbjct: 210 SSFGWGTFHLGFAGGNMDP 228


>At5g64310.1 68418.m08078 arabinogalactan-protein (AGP1) identical
           to gi:3883120 gb:AAC77823
          Length = 131

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 412 IQSRNTSPIPSRRKYPMXXKCPXLSPTPSKRXSLYRQXIRQIPS 543
           +  R  SP PS +K       P +SP+PS   +L  +     PS
Sbjct: 32  VGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAALTPESSASPPS 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,746,802
Number of Sequences: 28952
Number of extensions: 238049
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)