Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0093.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    28   0.058
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    28   0.058
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.7  

>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 118 RRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVHLAW--DPPKGAAIQNXELLYEVH 279
           R+ +  AVK  S+ DETLN   +   + RT V+L +       AA+    L+YE H
Sbjct: 93  RKKLLNAVKILSKIDETLNSKPLKPVKIRTKVYLVYCSSALVLAAMTTFHLIYEAH 148


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 118 RRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVHLAW--DPPKGAAIQNXELLYEVH 279
           R+ +  AVK  S+ DETLN   +   + RT V+L +       AA+    L+YE H
Sbjct: 89  RKKLLNAVKILSKIDETLNSKPLKPVKIRTKVYLVYCSSALVLAAMTTFHLIYEAH 144


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 175  LTAMLLKEKRTSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNP 309
            L   LL+  +  +H+ W       I   E   EVH S    +L P
Sbjct: 1281 LVVFLLQLNKDQIHVKWPLGVRTNITYIEETSEVHISKEYLQLEP 1325


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 175  LTAMLLKEKRTSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNP 309
            L   LL  K+  +H+ W       I   E   EVH S    +L P
Sbjct: 1281 LIVFLLTLKKDYLHIKWPFGVKTNITYDESTQEVHISKEYLQLEP 1325


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 175  LTAMLLKEKRTSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNP 309
            L   LL+  +  +H+ W       I   E   EVH S    +L P
Sbjct: 1281 LVVFLLQLNKDQIHVKWPLGVRTNITYIEETSEVHISKEYLQLEP 1325


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 175  LTAMLLKEKRTSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNP 309
            L   LL  K+  +H+ W       I   E   EVH S    +L P
Sbjct: 1281 LIVFLLTLKKDYLHIKWPFGVKTNITYDESTQEVHISKEYLQLEP 1325


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 634 GPWKGGNXIASXPYPRW 584
           GP  GG      PYPR+
Sbjct: 67  GPPSGGQPPQGMPYPRF 83


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 340 TKXTSVQIDNLXECES 387
           T  T+ +ID + EC+S
Sbjct: 407 TNGTNCEIDTINECDS 422


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,036
Number of Sequences: 336
Number of extensions: 2551
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)