Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0093.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239...    28   5.6  
03_05_0615 + 26137785-26138593,26139307-26141368                       28   5.6  

>11_01_0319 -
           2396835-2396951,2397035-2397105,2397219-2397297,
           2397417-2397458,2397670-2397723,2397836-2397868,
           2397959-2398039,2398144-2398230,2398313-2398388,
           2398633-2398808,2398912-2399034,2399249-2399361,
           2399521-2399632,2400054-2400273,2401986-2402314,
           2402408-2402713,2403580-2403878,2404079-2404181,
           2404266-2404369,2404840-2404906,2404911-2405076,
           2405241-2405956
          Length = 1157

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 13  KRDPVKIQTNNITITDLPPGRRSEHRHTSLQSVDIRRTIHAAVKNRSEPDETLNLTAMLL 192
           + D  +++  + T T+L   RR+ +  T + SVD     H  +K + EP + + L  MLL
Sbjct: 435 EEDEEQMEIRDQTETNLINLRRTIYS-TIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLL 493

Query: 193 K 195
           +
Sbjct: 494 E 494


>03_05_0615 + 26137785-26138593,26139307-26141368
          Length = 956

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 357 PNR*FT*VRELFFHCWPPXG 416
           PNR F  ++EL F CW P G
Sbjct: 815 PNRGFRCLKELCFQCWCPLG 834


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,437,800
Number of Sequences: 37544
Number of extensions: 274781
Number of successful extensions: 550
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)