Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0093.Seq
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38971| Best HMM Match : SRCR (HMM E-Value=0) 32 0.46
SB_12046| Best HMM Match : fn3 (HMM E-Value=0) 32 0.46
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23) 30 1.9
SB_19802| Best HMM Match : fn3 (HMM E-Value=0) 30 1.9
SB_55420| Best HMM Match : fn3 (HMM E-Value=0) 29 4.3
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_5603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7) 27 9.9
SB_49193| Best HMM Match : Exo_endo_phos (HMM E-Value=0.025) 27 9.9
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28) 27 9.9
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_3273| Best HMM Match : Neuromodulin (HMM E-Value=1.9) 27 9.9
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23) 27 9.9
>SB_38971| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2436
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/107 (18%), Positives = 44/107 (41%)
Frame = +1
Query: 205 TSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNPXDMSNDTKIITKXTSVQIDNLXECE 384
TS+ ++WD + + L Y V ++ + K+ T +Q ++ E +
Sbjct: 2069 TSIRVSWDQVPPSLVHGTLLGYSVSFTKRGNGTMRTVKTAPAKLEALLTGLQAYSMYEIQ 2128
Query: 385 SYSFTVGLLXGPXAXIIXIVTRENAKAPVKNLIAVYDXXXAAXXITW 525
+FT GP + +I ++T E+ + ++ + A + W
Sbjct: 2129 VCAFTAKGF-GPKSRVISVMTDEDVPSAAPTIVGIEPVNSTAVIVQW 2174
>SB_12046| Best HMM Match : fn3 (HMM E-Value=0)
Length = 652
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/107 (18%), Positives = 44/107 (41%)
Frame = +1
Query: 205 TSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNPXDMSNDTKIITKXTSVQIDNLXECE 384
TS+ ++WD + + L Y V ++ + K+ T +Q ++ E +
Sbjct: 285 TSIRVSWDQVPPSLVHGTLLGYSVSFTKRGNGTMRTVKTAPAKLEALLTGLQAYSMYEIQ 344
Query: 385 SYSFTVGLLXGPXAXIIXIVTRENAKAPVKNLIAVYDXXXAAXXITW 525
+FT GP + +I ++T E+ + ++ + A + W
Sbjct: 345 VCAFTAKGF-GPKSRVISVMTDEDVPSAAPTIVGIEPVNSTAVIVQW 390
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 31.1 bits (67), Expect = 0.81
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Frame = +1
Query: 205 TSVHLAWDPPKGAAIQNXELLYEVHYSNVIXRLNPXDMSNDTKIITKXTSV-QIDNLXEC 381
TSV + W+PP L Y++ + I SN T+ + +V QID+L +
Sbjct: 836 TSVRIYWEPPVNTEQNGIILGYKIIITETI-------QSNKTRSFSSFYTVQQIDHLNKF 888
Query: 382 ESYSFTVGLL----XGPXAXIIXIVTRENAKAPVKNLIAVYDXXXAAXXITW 525
Y+ V GP +I + T E+ N+ Y+ + + W
Sbjct: 889 SQYNVQVAAFTSKGYGPWG-LISLRTAEDVPTASPNITEAYNTSSTSIFVRW 939
>SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)
Length = 262
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 139 VKNRSEP-DETLNLTAMLLKEKRTSVHLAWDPPKGAAIQNXELLYEVHY 282
+ NRSEP D N+TA E TS+ + WDP + + Y V Y
Sbjct: 2 LSNRSEPQDAPANITATA--ESSTSIRVRWDPIDPSRTRGIHRGYRVCY 48
>SB_19802| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1075
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/72 (26%), Positives = 29/72 (40%)
Frame = +1
Query: 61 LPPGRRSEHRHTSLQSVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVHLAWDPPKG 240
L P RS + S + + + + N+TAM L TS+++ W PP
Sbjct: 367 LAPSMRSNCKRVSSTTSGSFMVLASRTSTNAPTAPPQNVTAMALSS--TSIYVTWQPPPP 424
Query: 241 AAIQNXELLYEV 276
+Q YEV
Sbjct: 425 GTLQGFLHHYEV 436
>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
Length = 789
Score = 28.7 bits (61), Expect = 4.3
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Frame = +1
Query: 151 SEPDETLNLTAMLLKEKRTSVHLAWD--PPKGA-AIQNXELLYEVHYSNVIXRLNPXDMS 321
S+P E ++ A+ T+V++ W P K IQN ++ + L+P S
Sbjct: 213 SQPPENVSACAV----NSTAVNVTWSRIPQKFLRGIQNGSVIVARRIIDTSSNLSPLVTS 268
Query: 322 NDTKIITKXTSVQIDNLXECESYSFTVGLLX----GPXAXIIXIVTRENAKAPVKNLIAV 489
++ I + NL Y TV L GP + + + T E+A + ++
Sbjct: 269 CESNAI-------LGNLEPFTQYCVTVAALTIKGAGPWSDCVTVTTHESAPSGPPLNVSA 321
Query: 490 YDXXXAAXXITW 525
Y+ + ITW
Sbjct: 322 YNTSSTSLRITW 333
>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 106 SVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVH 216
+VD+ R V+ + E+LNLT ++ K RT++H
Sbjct: 318 NVDLSRPSECYVRKYMDVLESLNLTQLVTKATRTTLH 354
>SB_5603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 106 SVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVH 216
+VD+ R V+ + E+LNLT ++ K RT++H
Sbjct: 9 NVDLSRPSECYVRKYMDVLESLNLTQLVTKATRTTLH 45
>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
Length = 839
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 106 SVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVH 216
+VD+ R V+ + E+LNLT ++ K RT++H
Sbjct: 329 NVDLFRPSECYVRKYMDVLESLNLTQLVTKATRTTLH 365
>SB_49193| Best HMM Match : Exo_endo_phos (HMM E-Value=0.025)
Length = 236
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 106 SVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVH 216
+VD+ R V+ + E+LNLT ++ K RT++H
Sbjct: 184 NVDLFRPSECYVRKYMDVLESLNLTQLVTKATRTTLH 220
>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
Length = 1239
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 106 SVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVH 216
+VD+ R V+ + E+LNLT ++ K RT++H
Sbjct: 96 NVDLFRPSECYVRKYMDVLESLNLTQLVTKATRTTLH 132
>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = +1
Query: 82 EHRHTSLQSVDIRRTIHAAV---KNRSEPDETLNLTAMLLKEKRTSVHLAWDPPKGAAIQ 252
++ +T ++S D R I +V K +S + + L+ SVH+ P G + +
Sbjct: 143 QYLNTIVESADTGRVIRVSVDQDKIKSAMCTSSGVIVSFLELFEGSVHILHLPENGGSGE 202
Query: 253 NXELLYEVHYSNV--IXRLNPXDMSNDTKIITKXTSVQIDNLXEC 381
N E LY+ +V I +NP + ++ ++ + C
Sbjct: 203 NLEKLYKKKSKHVARILYVNPKNKVVSLSMLDSIIQFKLPSFESC 247
>SB_3273| Best HMM Match : Neuromodulin (HMM E-Value=1.9)
Length = 457
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 197 KNAPPYIWPGTRPKGQRYK 253
K P ++ PGTRP +RY+
Sbjct: 318 KRCPAFVRPGTRPLSERYR 336
>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 197 KNAPPYIWPGTRPKGQRYK 253
K P ++ PGTRP +RY+
Sbjct: 638 KRCPAFVRPGTRPLSERYR 656
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 106 SVDIRRTIHAAVKNRSEPDETLNLTAMLLKEKRTSVH 216
+VD+ R V+ + E+LNLT ++ K RT++H
Sbjct: 301 NVDLFRPSECYVRKYMDVLESLNLTQLVTKATRTTLH 337
>SB_3618| Best HMM Match : C2 (HMM E-Value=4.8e-23)
Length = 486
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +1
Query: 31 IQTNNITITDLPPGRRSEHRHTSLQ-----SVDIRRTIHAAVKNRSEPDETL---NLTAM 186
+Q N++ DLP G + ++Q S ++ TI N + P + NL+
Sbjct: 32 LQGRNLSPRDLPSGTADPYVLVAIQPDWGNSGTLKSTIIQGTLNPTWPFGEIYRFNLSPE 91
Query: 187 LLKEKRTSVHLAWDPPKG 240
LKE + SVHL + P+G
Sbjct: 92 QLKETKLSVHLYDNDPEG 109
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.131 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,801,644
Number of Sequences: 59808
Number of extensions: 313513
Number of successful extensions: 638
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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