Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0093.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 105 KRRYTANHSRCR*KPKRTRRDAEPDRNAAKGKTHLRTSGLGPAQRGSDTK 254
           +RR  +   R R  P+RTRR   P R     ++ +R S   P ++ S ++
Sbjct: 94  RRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSR 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.131    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,828,550
Number of Sequences: 27780
Number of extensions: 231457
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)