Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0092.Seq
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.5  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    27   3.4  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   4.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   7.8  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    26   7.8  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 455  LRREHQGEHYGWRRRVIQKEI*P--NADEAAEAVFSELQRQFECCGNTGAINYG 300
            +R + Q  HYG+R+ +  K + P   A+ A ++ F+ L R+   CG   A+  G
Sbjct: 963  IRAKVQNLHYGFRKYIDWKHLHPVYQANRAQDSDFARLARRI--CGKAIALVLG 1014


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -3

Query: 249 FAGNNCTVDAANPGCGPKIGELYQKWNKPIAGVALGV--ACVEVVGA 115
           FAG+      A     PKI +   +W  P+  VA+ V  AC+  + A
Sbjct: 354 FAGSRSIYSLAKEHQAPKIFKYCNRWGVPVISVAVTVLFACLAFLNA 400


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/53 (35%), Positives = 20/53 (37%)
 Frame = -3

Query: 186 LYQKWNKPIAGVALGVACVEVVGALFALCLANSIRNMDRRSRY*YFVHYKLVR 28
           L  KWN      A  + CV V      L L NS  N D    Y   V  K VR
Sbjct: 41  LMDKWNSIPEDDAANLGCVRVKNDEIQLLLQNSPENADVPKIYNLRVMNKFVR 93


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -1

Query: 374 AAEAVFSELQRQFECCGNTGAINYGQFTLPESCCVKKSILLPSPATTARSTPRIPAAVPR 195
           A+  + +E          TG+ +    +   SC    SI  P+  +++ STP  P   P 
Sbjct: 83  ASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIP-PTGGSSSLSTPITPTVPPT 141

Query: 194 SASST 180
           S SST
Sbjct: 142 STSST 146



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 293 TLPESCCVKKSILLPSPATTARSTPRIPAAVPRSASST 180
           T   SC    SI  P+  +++ STP  P   P S SST
Sbjct: 224 TTSTSCTTSTSI--PTGGSSSLSTPITPTVPPTSTSST 259



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 293 TLPESCCVKKSILLPSPATTARSTPRIPAAVPRSASST 180
           T   SC    SI  P+  +++ STP  P   P S SST
Sbjct: 167 TTSTSCTTSTSIP-PTGGSSSLSTPITPTVPPTSTSST 203


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 541 RIAPQHPKNAITNITAPTTMKIHG 612
           RI P  P N + NIT P+T+  HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = -1

Query: 389 PNADEAAEAVFSELQRQFECC---GNTGAINYGQFTLPESCCVKKSILL---PSPATTA- 231
           PN  EA+E   ++ Q + +     G++  +N       ++  + +S  L   P+ +T+  
Sbjct: 7   PNETEASEDAENDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALNTTPNESTSQI 66

Query: 230 RSTPRIPAAVP 198
            S+P+IP+AVP
Sbjct: 67  DSSPKIPSAVP 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,483
Number of Sequences: 5004
Number of extensions: 57323
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)