Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0092.Seq
         (848 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0707 + 10569261-10571276                                         33   0.22 
11_01_0182 + 1437110-1438984                                           31   1.5  
11_02_0104 + 8329231-8329902                                           29   6.2  
11_02_0093 - 8238947-8239615                                           29   6.2  
09_06_0240 + 21797458-21799369,21799636-21799784                       29   6.2  
07_03_0736 - 21079880-21080185,21080231-21080429,21080531-210807...    29   6.2  
11_01_0727 - 6010537-6010548,6011029-6011606,6011709-6011774,601...    28   8.2  
06_03_0188 - 17691582-17692241                                         28   8.2  
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566...    28   8.2  
01_05_0698 + 24376193-24376708                                         28   8.2  

>03_02_0707 + 10569261-10571276
          Length = 671

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +1

Query: 100 AQREQGSYHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGVDRAVVAGEGRRMLFLTQQ 279
           A R +  Y    + T  N+G R +     L   G    + GVD AV+ G G  M + T Q
Sbjct: 63  ADRNKQPYSFRANATVLNSGTRPLKSWAMLVTFGYGEILVGVDGAVLTG-GGEMPYNTTQ 121

Query: 280 DSGN 291
           D+GN
Sbjct: 122 DAGN 125


>11_01_0182 + 1437110-1438984
          Length = 624

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 306 LRPV-HVARVLLRQEEHPPTFAGNNCTVDAANPGCGPKIGELY 181
           L PV H  R+LL     P TF  N+  + +++PGC P    LY
Sbjct: 83  LLPVPHRLRLLLSSPLPPTTFLANSFLLASSSPGCLPSALSLY 125


>11_02_0104 + 8329231-8329902
          Length = 223

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 121 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 225
           +HLN S    N GY  V   +  AD GTAA   G+
Sbjct: 63  FHLNASKYSGN-GYSTVCLKLHTADSGTAAAAGGI 96


>11_02_0093 - 8238947-8239615
          Length = 222

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 121 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 225
           +HLN S    N GY  V   +  AD GTAA   G+
Sbjct: 63  FHLNASKYSGN-GYSTVCLKLHAADSGTAAAAGGI 96


>09_06_0240 + 21797458-21799369,21799636-21799784
          Length = 686

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 240 NNCTVDAANPGCGPKIGELYQKWNK 166
           N+C  + A  G G KI E+ Q WN+
Sbjct: 628 NHCANETAQDGLGFKIDEIVQAWNE 652


>07_03_0736 -
           21079880-21080185,21080231-21080429,21080531-21080768,
           21080888-21081098,21081181-21081320,21081400-21081537,
           21086208-21087036
          Length = 686

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -3

Query: 282 VLLRQEEHPPTFAGNNCTVDAANPGCGPKIGELYQK----WNKPIAGVALGVAC 133
           VL R+ E P  ++   CT D     CG  +  +  K    +   I G  LGV C
Sbjct: 185 VLDRESEFPKVYSWAQCTPDLTPAQCGDCLAAIIAKLPRLFTNRIGGRVLGVRC 238


>11_01_0727 -
           6010537-6010548,6011029-6011606,6011709-6011774,
           6011867-6011964,6013238-6013608
          Length = 374

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 267 EEHPPTFAGNNCTVDAANPGCG 202
           + HPPT+ G+N      NPG G
Sbjct: 315 QPHPPTYPGSNQGAPGVNPGYG 336


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 305 YGQFTLPESCCVKKSILLPSPATTARSTPRIPAAVPRSASSTR 177
           Y  + LP S  V  S+  P P TT  +T  +PA+   +A  T+
Sbjct: 16  YTTYPLPASPWVMTSLEKPPPWTTTTTTMAVPASPRETAFPTK 58


>05_07_0066 +
           27453611-27453627,27454729-27454872,27455998-27456690,
           27457700-27458111,27458220-27458297,27458938-27458953,
           27459038-27459192
          Length = 504

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 495 SPARSCVRDDHAVTLAYRSTASQ-ERDHEHYSPDDYEDPRTDSKMGL 632
           +PA +      A     RS A + ERDH H+ P D  DP + S  G+
Sbjct: 128 APAPAPPSSSSAAAAPGRSPARERERDHGHH-PSDISDPTSPSSTGV 173


>01_05_0698 + 24376193-24376708
          Length = 171

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 165 PIAGVALGVACVEVVGALFALCLANSIRN 79
           P+AGV +  A V  V ALF  CLA  +R+
Sbjct: 126 PVAGVLVMGADVAGVSALFGFCLAEYLRH 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,290,838
Number of Sequences: 37544
Number of extensions: 431591
Number of successful extensions: 1502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)