Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0092.Seq
(848 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 54 2e-07
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 3e-06
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 48 1e-05
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 47 2e-05
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 46 3e-05
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 4e-04
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 41 0.001
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 41 0.001
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 40 0.003
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 38 0.008
SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73) 35 0.073
SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 31 1.6
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 31 1.6
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 29 3.6
SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16) 29 4.8
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_34927| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_9216| Best HMM Match : Connexin (HMM E-Value=1.5) 29 6.3
SB_35792| Best HMM Match : His_leader (HMM E-Value=3.5) 28 8.3
SB_24041| Best HMM Match : rve (HMM E-Value=9.7e-08) 28 8.3
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/97 (30%), Positives = 46/97 (47%)
Frame = -1
Query: 611 PWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGE 432
P + IV+G V ++AFL CCGA++ES CM+ TY + + + RE +
Sbjct: 59 PILCIVIGIVTVIVAFLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEK 118
Query: 431 HYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGN 321
+ R E + +A E+ R F+CCGN
Sbjct: 119 NLHGDIRSTMNEYHLSGHDAVTRAIDEIHRDFKCCGN 155
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 49.6 bits (113), Expect = 3e-06
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Frame = -1
Query: 641 DLLKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASS 462
++ + A GP + I VG ++ ++AFLGCCGA +E+ CM++ + + +
Sbjct: 44 EIASVNYATGPRVVIAVGFIIALVAFLGCCGAWKENKCMLICFFAFLLLLLILE---IVG 100
Query: 461 SSLRREHQGEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINY------- 303
+L ++ + + I K I N E +++Q +F+CCG ++
Sbjct: 101 GALAYNNKDKIENRLDKDILKAI-ENYPGKNEKSINDMQTKFKCCGADNYTDWQSNIKMK 159
Query: 302 GQFTLPESCC 273
++P+SCC
Sbjct: 160 NSSSVPDSCC 169
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 48.0 bits (109), Expect = 1e-05
Identities = 28/94 (29%), Positives = 45/94 (47%)
Frame = -1
Query: 605 IFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGEHY 426
IF V+G +MF I F GC GA+RE+ C + Y TS + LC L + ++ + +
Sbjct: 80 IFFVIGILMFFIGFFGCVGALRENTCFLTVYGTSVF---LCLILLIACGAVAYTQKDKVQ 136
Query: 425 GWRRRVIQKEI*PNADEAAEAVFSELQRQFECCG 324
+ R+ Q D + + +Q +CCG
Sbjct: 137 ALKERLKQDLKKYLDDPLNQDLIDFMQTLLKCCG 170
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 46.8 bits (106), Expect = 2e-05
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Frame = -1
Query: 614 GPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREH-Q 438
G + I VG ++ +IAF GCCGA +E+ CM++ + + A + ++ Q
Sbjct: 406 GSRLLIAVGCIITIIAFFGCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQ 465
Query: 437 GEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAIN---YGQFTL---PESC 276
+ R I KE N A +A +Q FECCG G + YGQ P SC
Sbjct: 466 SDLTDDIIRNI-KEYPKNNKAAIDA----MQMDFECCGAKGPSDWTFYGQMKYKAGPGSC 520
Query: 275 CVKKSILLPSPATTARSTPR 216
C K + P T PR
Sbjct: 521 CGKPNNDACLPGTRNSKLPR 540
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 46.4 bits (105), Expect = 3e-05
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 17/137 (12%)
Frame = -1
Query: 620 AVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTY-------ATSCW*SSLCKW*LASS 462
A G + I VG ++ +++F GC GA +E+ CM+ T+ T +++ +
Sbjct: 53 ATGSRLVIAVGVIIAIVSFFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAYNYRGK 112
Query: 461 SSLRREH---QGEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINY---- 303
+SL + + E + ++ + + + F LQ + +CCG G +++
Sbjct: 113 NSLNSDSVKVKDEIESDLTKALKGDYGSSGQDGVTKAFDALQEKQKCCGVNGYLDWKASK 172
Query: 302 ---GQFTLPESCCVKKS 261
G T+P+SCCV K+
Sbjct: 173 KYNGTSTVPDSCCVVKA 189
>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1
Query: 641 DLLKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMV 522
DL A G I I GA++ +I+F GCCGAI+ES C++
Sbjct: 16 DLQSVKYATGYIIVIAAGALIALISFFGCCGAIKESRCLL 55
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 44.0 bits (99), Expect = 2e-04
Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Frame = -1
Query: 641 DLLKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASS 462
+L G I I VGA + +++F GCCGAI+E C++ T+ + + +
Sbjct: 316 ELQSVKYITGSIIIIAVGAFIALVSFFGCCGAIKEHRCLLATFFALLFIILAVEITGTAL 375
Query: 461 SSLRREHQGEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINY--GQFT- 291
+ R E G E + +Q++ +CCG G ++ +T
Sbjct: 376 GYVYRNKVEEQLGKDMNDTIVSYGEKGKEGITDAYDAIQKKEKCCGINGFKDWQRSYYTK 435
Query: 290 -----LPESCC 273
+P+SCC
Sbjct: 436 GNHSIVPDSCC 446
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 43.2 bits (97), Expect = 3e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -1
Query: 605 IFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSC 501
IF+ +G ++FVI GC GA+RE+ C++ Y C
Sbjct: 106 IFLALGGLLFVITIFGCIGALRENRCLLTAYIWMC 140
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 42.7 bits (96), Expect = 4e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 620 AVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVT 516
++ W I GA + + F GCCGA++ES CM+ T
Sbjct: 311 SIPAWTMIGAGAFVTFVGFFGCCGAVKESRCMLAT 345
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -1
Query: 635 LKTH-LAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYAT 507
L +H A +I I +G ++ +I F+GCCGA++E C++ T T
Sbjct: 208 LSSHDYATAAYILIGIGFLIAIIGFIGCCGALKEHTCLLKTIKT 251
Score = 33.9 bits (74), Expect = 0.17
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -3
Query: 162 IAGVALGVACVEVVGALFALCLANSIRN 79
I GVALG+A +++G F+ CLA+++ N
Sbjct: 351 IGGVALGLAVFQLIGIAFSCCLASTLHN 378
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/94 (26%), Positives = 48/94 (51%)
Frame = -1
Query: 605 IFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGEHY 426
+ ++VG ++F+IA +GC GA+RE+ ++ Y + +LC L S+ + H+ +
Sbjct: 84 VILIVGILLFLIATVGCIGALRENTILLAIYGGAV---TLCLILLVSAGTAVYIHRDKVV 140
Query: 425 GWRRRVIQKEI*PNADEAAEAVFSELQRQFECCG 324
+ +Q P+ E + + LQ +CCG
Sbjct: 141 AKLKDDLQHYRDPD-KENFQFLIDRLQTNLKCCG 173
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -1
Query: 635 LKTH-LAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVT 516
L +H A +I I +G ++ +I F+GCCGA++E C++ T
Sbjct: 66 LSSHDYATAAYILIGIGFLIAIIGFIGCCGALKEHTCLLKT 106
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/94 (26%), Positives = 47/94 (50%)
Frame = -1
Query: 605 IFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGEHY 426
+ ++VG ++F+IA +GC GA+RE+ ++ Y + +LC L S+ HQ +
Sbjct: 84 VILIVGILLFLIATVGCIGALRENTILLAIYGGAV---TLCLIFLVSAGIAVYMHQDKVV 140
Query: 425 GWRRRVIQKEI*PNADEAAEAVFSELQRQFECCG 324
+ ++ P+ E + + LQ +CCG
Sbjct: 141 EKLKDDLKHYRDPD-KENFQFLIDRLQTNLKCCG 173
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 38.7 bits (86), Expect = 0.006
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = -1
Query: 599 IVVGAVMFVIAFLGCCGAIRESHCMV 522
I+VG +MF++ F GC GA+RE+ C++
Sbjct: 51 IIVGGIMFILGFSGCIGALRENICLL 76
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 38.3 bits (85), Expect = 0.008
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = -1
Query: 605 IFIVVGAVMFVIAFLGCCGAIRESHCMVV 519
I I GA++ I F+GCCGA++E+ C ++
Sbjct: 201 IMIAAGALVMFIGFVGCCGAVKENKCFLL 229
>SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73)
Length = 150
Score = 35.1 bits (77), Expect = 0.073
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = -1
Query: 626 HLAVGPWIFIVV-GAVMFVIAFLGCCGAIRES 534
+LA P + + + G +MFVI+F GC GA+RE+
Sbjct: 13 NLATDPAVMLAIAGVLMFVISFSGCLGALREN 44
>SB_31540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 33.1 bits (72), Expect = 0.29
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 472 NHHLHNDDHQQEVAYVTTMQ*LSRIAPQHPKNAITNITAPTTM 600
NH+ HN H+ + +TT + I H +N I IT TT+
Sbjct: 235 NHYSHNHHHRNIIFTITTTTTIVTITINHHRNIIFTITTTTTI 277
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 288 ARVLLRQEEHPPTFAGNNCTVDAANPGCGPKIGELYQKWNK 166
+R+ R E++PPT N VDA + P+ Y W +
Sbjct: 310 SRLTNRSEQNPPTITENEDQVDAQHSTASPRNTSNYSPWER 350
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 635 LKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTY 513
L++ + P + G +++I F GC GA++E+ + +Y
Sbjct: 65 LQSFMLYMPTLLFFTGFSLYLIVFFGCVGALKENTLFLASY 105
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 29.5 bits (63), Expect = 3.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -1
Query: 611 PWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTY 513
P + I G ++ ++ +GC I+E+ ++V+Y
Sbjct: 60 PGLMIAAGCLVIIVCVVGCVAVIKENRFILVSY 92
>SB_47002| Best HMM Match : RVT_1 (HMM E-Value=1.5e-16)
Length = 894
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 333 MLR*HWRY-QLRPVHVARVLLRQEEHPPTFAGNNCT 229
+LR HWR QL+ +H RVL PP AG++ T
Sbjct: 843 LLRIHWRQRQLQHMHRRRVLSMTVCRPPAVAGSSKT 878
>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1564
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 290 LPESCCVKKSILLPSPATTARSTPRI 213
L SC V + + PSPA T RS PR+
Sbjct: 389 LVASCKVPEKVNAPSPAQTLRSLPRV 414
>SB_34927| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 590 GAVMFVIAFLGCCGAIRESHCMVVTYATS 504
G +FV+ F CCG C+V+ Y +S
Sbjct: 10 GGRIFVLTFCCCCGLFLLLFCLVILYLSS 38
>SB_9216| Best HMM Match : Connexin (HMM E-Value=1.5)
Length = 334
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 263 SILLPSPATTARSTPRIPAAVPRSASSTRNG 171
S+ P+ T R R PA+ PR++ S RNG
Sbjct: 303 SLRQPASRATPRQPARQPASQPRNSHSARNG 333
>SB_35792| Best HMM Match : His_leader (HMM E-Value=3.5)
Length = 168
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 543 YRSTASQERDHEHYSPDD 596
YR T SQ R H H++PD+
Sbjct: 104 YRRTRSQLRPHHHFAPDE 121
>SB_24041| Best HMM Match : rve (HMM E-Value=9.7e-08)
Length = 399
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 543 YRSTASQERDHEHYSPDD 596
YR T SQ R H H++PD+
Sbjct: 336 YRRTRSQLRPHHHFAPDE 353
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,867,735
Number of Sequences: 59808
Number of extensions: 486760
Number of successful extensions: 1545
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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