Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0092.Seq
         (848 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    65   9e-13
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 64.9 bits (151), Expect = 9e-13
 Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
 Frame = -1

Query: 647 VKDLLKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LA 468
           V   ++T LA      IV+G+++FVI+F GCCGAIRESHCM +T+A+      L +  +A
Sbjct: 40  VSKQIETGLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVA 99

Query: 467 SSSSL--RREHQGEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINYGQF 294
             + +  + +    +   + + I      N++  ++     +Q+  +CCG     +Y   
Sbjct: 100 VYAFIVVKNDDNFRNISEKYQEIFNGYFLNSE--SKDFIDFIQKNLQCCGVHSLSDYNDK 157

Query: 293 TLPESCC 273
            +P SCC
Sbjct: 158 PIPASCC 164



 Score = 44.8 bits (101), Expect = 1e-06
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -3

Query: 240 NNCTV-DAANPGCGPKIGELYQKWNKPIAGVALGVACVEVVGALFALCLANSIRNMDRR 67
           N C++ ++   GC   + +  +        VA+ +A VE++G + ALCLANSI+N +RR
Sbjct: 170 NTCSISNSYTNGCVEALKDTVKLAGTVFGSVAIAIAIVELIGIICALCLANSIKNAERR 228


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 170 FHFW*SSPILGPQP-GFAASTVQLLPAK 250
           F FW S  ++GP+P  F  +T  L+  K
Sbjct: 26  FDFWKSRGVVGPKPVPFFGTTKDLILVK 53


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 177 KWNKPIAGVALGVACVEVVGALFALCL 97
           +WN   A     ++C+ +V  +   CL
Sbjct: 510 RWNSAFAIAPAVISCLGIVATMAVACL 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 177 KWNKPIAGVALGVACVEVVGALFALCL 97
           +WN   A     ++C+ +V  +   CL
Sbjct: 600 RWNSAFAIAPAVISCLGIVATMAVACL 626


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,333
Number of Sequences: 438
Number of extensions: 4187
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)